Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01825 ATGAACAAGCCACGTGGAGGAACCATTCCCCTCTGCTTCCTCTTCTTTCTCACACTCTCCCTCGCCGGAGCACAACAACCCTTGACCGATAACCATGACGATTCTTATTACAACCGCGTTAGCCCTTCAATGGCTATTATAATTGTCATACTCATCGCCGCTCTGTTTCTATTGGGATTTTTCTCAATATACATCCGCCACTGCTCCGATTCCCCCTCCGCCAGCGTCCGCTACCTCACTGGCGGTGCAGGACGTTCCCGCCGGGCTTCTCGGGGACTGGACCCAGCCGTGATCGAGAAGTTCCCGACTCTGGAATATTCCGTGGTGAAGATTCACAAGATCGGAAAGGACGCGCTAGAATGCGCGGTGTGCTTGAACGAATTCGAGGATACCGAAACGCTGCGTTTGATCCCAAAGTGTGACCATGTTTTCCACCCGGAGTGTATCGATGAGTGGCTTGCTTCACACACCACCTGCCCTGTCTGCCGAGCCAACCTCGTGCCCCAACCTGGAGACTCCATACGTGGAATTCCAGTCCTGAACGCCGAACCACAAGATATCGAGGCACAAAACGACGTCGTTGAACCCGTTCCCGAACAGCAAAATGTGGACGTTGTTCAAGACTCAGCCGAACCGAAAGTGATTCCCTTGAACCGGAACCGTACGAGAGGGTCCCGGTCCAGCCGGACTAGAAGCTTTCCACGGTCTCACTCGACCGGTCATTCATTGGTCCAACCTGGTGACGATACTGAACGGTTCACTTTGAGACTTCCCGATGAAGTGAGGAAGCAGATACTGAACACGGAGTTGCATCGGGCCAGAAGCTTGGTTATCTTACCCAGAGAAAGTAGTTCACGGCGGGGATATCGAACCGGTGGGGAAGGAAGTAGTAGGGGAAGGTCTTCAAGGCGGTTGGACCGGGGTTTCAAATCAGAGCGGTGGGTTTTCACGATGGCGCCACCGTTCCTAGTTAGAGCATCGTCGATTAGGTCCCCAAGGGTAGCTAATAGTGCCGGTGAAGGCACCTCCGCCACAGTAGCCACTCATGCGCCGCCGGCTGTGGACTCTCCACGCCCTCCGGTTTAA 1086 0.5442 MNKPRGGTIPLCFLFFLTLSLAGAQQPLTDNHDDSYYNRVSPSMAIIIVILIAALFLLGFFSIYIRHCSDSPSASVRYLTGGAGRSRRASRGLDPAVIEKFPTLEYSVVKIHKIGKDALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGDSIRGIPVLNAEPQDIEAQNDVVEPVPEQQNVDVVQDSAEPKVIPLNRNRTRGSRSSRTRSFPRSHSTGHSLVQPGDDTERFTLRLPDEVRKQILNTELHRARSLVILPRESSSRRGYRTGGEGSSRGRSSRRLDRGFKSERWVFTMAPPFLVRASSIRSPRVANSAGEGTSATVATHAPPAVDSPRPPV* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01825 361 CDD RING-H2_EL5-like 120 163 - -
Rops6g01825 361 MobiDBLite consensus disorder prediction 334 361 - -
Rops6g01825 361 MobiDBLite consensus disorder prediction 284 305 - -
Rops6g01825 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 168 IPR013083 -
Rops6g01825 361 MobiDBLite consensus disorder prediction 231 245 - -
Rops6g01825 361 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Rops6g01825 361 Pfam Ring finger domain 120 163 IPR001841 -
Rops6g01825 361 SMART ring_2 121 162 IPR001841 -
Rops6g01825 361 MobiDBLite consensus disorder prediction 218 251 - -
Rops6g01825 361 FunFam E3 ubiquitin-protein ligase ATL6 82 169 - -
Rops6g01825 361 SUPERFAMILY RING/U-box 113 170 - -
Rops6g01825 361 PANTHER RING FINGER DOMAIN-CONTAINING 29 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01825 Rops-Chr6 36003185 36004588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01825 7 361 Rapid Response to Elicitors AT3G05200 44.527 3.10e-93 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01825 K10664 - gmx:100810865 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01825 6 36003185 36004588 Rops6g01825 6 36003185 36004588 ECH
Rops8g04012 8 81549010 81550336 Rops6g01825 6 36003185 36004588 PCT