Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01821 ATGGCACTAGAAGCAGTGGTTTATTCACAAACACAAGAGCCATTTGGTTATGGAGTGAAAGACTTCTATAACTGTAACTTGCTGGCTGGTGCAGGCAACTGGGGCTATGAAGACCTCAACTTTGAAAAAGAAGAACAACATGGTTCTATTAGTTTTATAGAGAACCAAGCAGAGAATTATCCATATGGAGATTGGAGTAGCTCCTCCACATCAATGATACCCACCTTGAATGAACTTCAAGAAACCACTGACCCCACCAACACTCAAAACTTAGATAGCTCAGTCTCCACCCCAACTAGGCCCAAGAGGCGCAGAGCCAGAAGCAGAAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTGGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTAGGTCTCTAATGCCAGACTCTTACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTGAAAGAGCTTGAGCAGAGGCTGCAATTTCTAGGTGCTCAGAAAGAAGCAGAAGGGAAATCTGATGCTGGTGAGCAAGTGGGTGAGGTTCATTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGGCCAAAGCAGCTCTTGAAGATGGTCACTGGTTTGCATAGCATGCGCCTAACAATCTTGCACCTAAATGTTACTACCACTGATGAAATTGTCCTCTACTCTCTCAGTGTTAAGGCAGAAGATGATTGCAAGTTGGGATCAGTAGATGATATAGCAGCAGCTGTATACCAGATGCTGAATAGGATTCAACAAGAGGCAATGATGAATTAA 864 0.4271 MALEAVVYSQTQEPFGYGVKDFYNCNLLAGAGNWGYEDLNFEKEEQHGSISFIENQAENYPYGDWSSSSTSMIPTLNELQETTDPTNTQNLDSSVSTPTRPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLQFLGAQKEAEGKSDAGEQVGEVHSGIADIEVTMVESHANLKIRSKKRPKQLLKMVTGLHSMRLTILHLNVTTTDEIVLYSLSVKAEDDCKLGSVDDIAAAVYQMLNRIQQEAMMN* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01821 287 MobiDBLite consensus disorder prediction 81 97 - -
Rops6g01821 287 Gene3D - 101 183 IPR036638 GO:0046983
Rops6g01821 287 MobiDBLite consensus disorder prediction 81 115 - -
Rops6g01821 287 CDD bHLH_AtFAMA_like 120 190 - -
Rops6g01821 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 168 IPR011598 GO:0046983
Rops6g01821 287 PANTHER MAX DIMERIZATION, MAD 66 284 - -
Rops6g01821 287 SMART finulus 123 174 IPR011598 GO:0046983
Rops6g01821 287 Pfam Helix-loop-helix DNA-binding domain 118 169 IPR011598 GO:0046983
Rops6g01821 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01821 Rops-Chr6 35889112 35890697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01821 1 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.884 4.59e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g01821 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01821 - - pvu:PHAVU_007G181900g 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01821 6 35889112 35890697 Rops6g01821 6 35889112 35890697 ECH
Rops8g04013 8 81593144 81594755 Rops6g01821 6 35889112 35890697 PCT