Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01817 ATGCCCAAAATGGCTTTGTTGCTTCCTTTTTCAACTTCATATCTCAGCACAAGCACCATTGTTGCACTCTGCGTATTCTTCACACTTCTCTGTGCCTGCGTCATCGTTGGCCATCTTCTGGAAGAGAATCGGTGGGCCAATGAATCCATCACTGCCCTCCTTCTGGGGTTGTGTTCTGGAGTGGTGGTGTTGCTGGTGACCAAGTTCCATAGTACAAAGATTCTAATATTCAGTGAAGACTTGTTCTTCCTTTACTTGCTTCCTCCGATCATTTTCAATGCCGGTTTCCAAGTTAAGAAGAAACAGTTCTTCAAGAATTTCACAACTATACTGCTGTTTGGAGTCCTTGGAACAGTCATTTCATTCTGTCTCATATCTGTTGGTGCCTTTCTGCTCATTAATAGGGTTGGCATGGCTAACCTGGGCATAAAAGATTACCTAGCCATTGGTGCCATATTGTCAGCAACTGACTCAGTCTGTACGTTGCAGGTTCTGAGTCAAGATGAAACACCTTGGCTTTACAGCATTGTATTTGGAGAGGGAGTTGTAAATGATGCTACGTCTATTGTTCTTTTCTATTCAGTCCAATCACTTGACTTCAGCAGCATCAATGCTATTACAGCCTTGAAATTGTTGGGGACCTTCCTTTACCTCTTTTGCACAAGTACTGCCCTTGGAATAGTAGTTGGCCTTTTAAGTGCTTTTATTATTAAAACACTTTACTTTGGAAGGCACTCTACGGATCGTGAAGTTGCACTTATGATGTTGATGGCATATTTGTCATATATGATCGCTGAGCTTTTGAATCTCAGTGGGATTTTGACCATTTTCTTCTGTGGCATCGTCATGTCACACTACACATGGCACAACGTTACACCAAGCTCAAGGACAACTACCAAGCATTCCTTTGCAACTATTTCATTCATTGCTGAAACCTTTATATTTCTATATGTTGGCATGGATGCTTTAGACATTGACAAATGGAAAAGCAGCAAAGCCAGCGTAGGAACTTCAGTTGCTGTCAGTTCAACGTTGATTACATTAGTGTTGATTGGAAGAGCAGCTTTTGTATTCCCTATTGCAAACATTACAAATTGCATCAAGACAGGAGAGAGTACCAAAATTGAGTTTCGATCGCAGTTTATAATATGGTGGGCAGGCCTAATGAGAGGTGCAGTGACTATTGCCTTGTCATATAACCAGTTTGCGAAATCCAAGATGACATCAATTCAGGACTCTTCATTAATGATCACCTCTACTATAATTGTCGTCTTATTCAGTACCGTGGTATTTGGTTCCATAACAAAGCCTTTGATTGAGGCTGTGCGGCTAAGGCATTCAAAACCAGCCATTTCTGATTCCACTGATAATCCTCCAGAAGATTTGAGATTATTTTTCCTTGAAAACAATAGTTCCATTAACCAAAGCAACAATCAGCCAAGTCACAGGCGAAGTAGCTTGAGTTTGCTTATACGTCATCCTGCTACAACAGTTCATTACTTTTGGAGGAAATTTGATGATAAGTTTATGAGACCCATTTTTGGTGGAAGGGGTTTCGTTCCGGTTGTTCCTCCTTCATCATCCGGTGAAGAAGAAGACATTTCTTGA 1608 0.4104 MPKMALLLPFSTSYLSTSTIVALCVFFTLLCACVIVGHLLEENRWANESITALLLGLCSGVVVLLVTKFHSTKILIFSEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTILLFGVLGTVISFCLISVGAFLLINRVGMANLGIKDYLAIGAILSATDSVCTLQVLSQDETPWLYSIVFGEGVVNDATSIVLFYSVQSLDFSSINAITALKLLGTFLYLFCTSTALGIVVGLLSAFIIKTLYFGRHSTDREVALMMLMAYLSYMIAELLNLSGILTIFFCGIVMSHYTWHNVTPSSRTTTKHSFATISFIAETFIFLYVGMDALDIDKWKSSKASVGTSVAVSSTLITLVLIGRAAFVFPIANITNCIKTGESTKIEFRSQFIIWWAGLMRGAVTIALSYNQFAKSKMTSIQDSSLMITSTIIVVLFSTVVFGSITKPLIEAVRLRHSKPAISDSTDNPPEDLRLFFLENNSSINQSNNQPSHRRSSLSLLIRHPATTVHYFWRKFDDKFMRPIFGGRGFVPVVPPSSSGEEEDIS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01817 535 PANTHER SODIUM/HYDROGEN EXCHANGER 23 514 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Rops6g01817 535 Pfam Sodium/hydrogen exchanger family 27 440 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Rops6g01817 535 NCBIfam sodium/hydrogen exchanger 3 19 450 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Rops6g01817 535 PRINTS Na+/H+ exchanger signature 150 160 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Rops6g01817 535 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Rops6g01817 535 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Rops6g01817 535 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Rops6g01817 535 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Rops6g01817 535 Gene3D - 142 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01817 Rops-Chr6 35849521 35853472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01817 15 528 Antiporters AT5G27150 62.282 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01817 K14724 - zju:112490496 780.015