Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01809 ATGGAGAATGAGGGTGTCGCTCACACTCTAGGTTATTGTTTATGGGGCCCTGAGAAAAGCTCTGCTCATAAATCAAAAAAGGTCCATATGGCTGATGCTTTTCATTTTAAACCCAAGAAACTAGGTTCTCTTTTTGCTTGTTCTGCTTCTGCACAAGACTTGAGAGGTATGGACCTGGAGAAAGAGAAAGAAGATGAGGCATCTCCAAGAGGAGTCTTAGAGGCCTGCATGAAAGACTTTGGCTCTCAGCAACCACCTGAATCAGAAGCCAATTGTTCAAATTCAAGGGTACGGTCTCACTGGAGCAATTTTTTCCACCATTGGAAAAAAAGATCATTTAAGCGTCTAGCTTCCATACCTGCAATTGGTGTGCCAAAGATGCCAAAGTGGAAAAGCAGAAGCACAAGAGAAAACCCTGGTCGAAGTAATTTATACAACTTCAGGTCTTCTTTGGTGACTTTCAGCCTCTCTGACCTTAGAAATGCCACCAACAATTTCAGCAATGAAAATTTAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGTCATCTCCGAGATGGACAGTTAATAGCTGTGAAGAAAATGACTAAAGGGACCACAGATGAGAAGACTGCTGGCTTTCTATCTGAGCTAGGTGTTCTTGCTCATGTTGATCATCCTAATACTGCCAAGCTTATTGGATGTGGTGTGGAAGGAGAAATGCACCTTGTCTTTGAACTATCTTCACTGGGAAGTTTAGGATTTCTTCTTCATGGTTCTGATAAAAACAAGTTAGATTGGAGTAAAAGATACAAAATTGCTCTGGGAATAGCTGATGGTCTTCTCTATCTGCATGAGAATTGTCACCGGCGGATCATTCATAGAGATATTAAGGCAGACAATATTCTGCTTACGGAGAATTTTGAGCCACAGATCTGTGATTTTGGGCTGGCGAAGTGGTTACCAGAACAATGGACTCACCATAATGTGTCAACATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGCATAGTAGACGAGAAAACTGATGTTTATTCCTTTGGGGTCCTCCTTTTGGAGATCATAACAGGGCATCCGGCTATTAATCATTTACAGCAGAGTGTCGTGATATGGGCAAAATCTTTGCTTGAAGCTGACAATATCAAGGATCTTGTTGATTCTTCTCTCGGAGATAATTATGACCGAGAGGAGATGGGTCGTGTTGTTTTGACAGCGTCATTGTGTGTTGAGCAGTCTCCTCTCTTACGTCCCCTCATGAATCAGGTTGCAACAATGCTAAGAGGTGATGACAGTGTGCTACCTTCAAAAGCATGCCAAAGGAGGCCTCTCCTAAGAACATACTCAGAAGAGCTACTGGATGTGCAAGAATACAACTCAACAAAATATTACAGAGATCTCAATCGATATAAGCTGGTTGCCTTGGGTCTTGAATGCTAA 1455 0.4199 MENEGVAHTLGYCLWGPEKSSAHKSKKVHMADAFHFKPKKLGSLFACSASAQDLRGMDLEKEKEDEASPRGVLEACMKDFGSQQPPESEANCSNSRVRSHWSNFFHHWKKRSFKRLASIPAIGVPKMPKWKSRSTRENPGRSNLYNFRSSLVTFSLSDLRNATNNFSNENLIGRGGFAEVYKGHLRDGQLIAVKKMTKGTTDEKTAGFLSELGVLAHVDHPNTAKLIGCGVEGEMHLVFELSSLGSLGFLLHGSDKNKLDWSKRYKIALGIADGLLYLHENCHRRIIHRDIKADNILLTENFEPQICDFGLAKWLPEQWTHHNVSTFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIITGHPAINHLQQSVVIWAKSLLEADNIKDLVDSSLGDNYDREEMGRVVLTASLCVEQSPLLRPLMNQVATMLRGDDSVLPSKACQRRPLLRTYSEELLDVQEYNSTKYYRDLNRYKLVALGLEC* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01809 484 SUPERFAMILY Protein kinase-like (PK-like) 141 432 IPR011009 -
Rops6g01809 484 ProSiteProfiles Protein kinase domain profile. 166 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01809 484 Gene3D Transferase(Phosphotransferase) domain 1 243 444 - -
Rops6g01809 484 Pfam Protein tyrosine and serine/threonine kinase 169 376 IPR001245 GO:0004672|GO:0006468
Rops6g01809 484 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 243 446 - -
Rops6g01809 484 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 142 241 - -
Rops6g01809 484 PANTHER OS08G0249100 PROTEIN 52 463 IPR046958 -
Rops6g01809 484 Gene3D Phosphorylase Kinase; domain 1 128 240 - -
Rops6g01809 484 SMART serkin_6 166 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01809 484 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524
Rops6g01809 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01809 Rops-Chr6 35810567 35814733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01809 151 438 Receptor kinase-like Gene Family AT1G53420 43.771 5.84e-70 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops6g01809 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01809 - - cam:101512181 769.229