Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01796 ATGGGGTGTGTGATTAGCCGAGAAGTGTCATCAGGGATAATCTCTGAGGTGAAGGAGGAGAAGAGTTTGAGTGTTGGGTCTAACAAGAAGGCTGAGGAAGTGTCAACAAGCAGAGCTGAGGGGAATGGGGTAGAGGTTCAGAATGGTGAGAAGGTGAAGGAGAAGGAAGAGAAGGTTGGTGATGATGGGGTTCGGAGGCCAAAGGGTGAGAGAAGAAGATCAAAGCCAAACCCAAGGCTAAGTAATCCTCCGAAGCATTTGCAAGGGGAGCAGGTAGCAGCTGGGTGGCCATCTTGGCTTACAGCAGTGTGTGGGGAAGCCCTTAATGGGTGGATTCCACGAAAGGCCGACACATTTGAGAAAATAGATAAGATTGGTCAGGGAACATACAGTAATGTGTACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCCCTGAAGAAGGTTCGATTTGACACTTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATATTGCGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCGAGAATGTCATGGAGTTTGTATCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTCACAGAGCCTCAGGTCAAATGTTACATGCATCAACTGCTGTCAGGACTTGAGCACTGTCATAATCGACATGTACTTCACCGCGATATTAAAGGATCAAATCTTCTTATCAATGATGAAGGAATACTCAAAATTGCTGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGACATCCCATGACTAATCGTGTAGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTTGGTGCTACAGAATATGGTGTGGCTCTGGACCTTTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCAATTATGCCTGGTCGTACAGAGGTTGAACAACTGCATAAGATATACAAACTTTGTGGTTCACCTTCTGAGGAGTACTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCTCGAGAACCATACAAAAGATGCATTAGGGAGACATTTAAAGATTTTCCACCTTCTGCACTGCCCCTTATCGATACTCTTCTTGCAATTGATCCAGCAGAACGGAAGAGTGCCTCACATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAGTATTCCCCAACCAAGGAAATGGATGTTAAACGACGAGATGATGAAGCAAGGAGATTAAGAGCTGCAGGCAAAGCTCATGCTGATGGTGGAAAGAAGCATCGTACACGTGATCGTGCTGTTAAAGCTGTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGGCGTCTAATCACTCATGCCAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCGCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCAAATCATATTGATCCAGATATTGTTCCTCCTGATGTACCTTTGGGTTCAACCTCATATACCTTTTCAAAGGAACCATTCCAAACTTGGTCAGGTCCCATTGGTAATCCTGCTAGCATTGGTGTCACAAAGCGGAAGAAACACGCTGCAAGTGATGCATTGGATTTACCAAAACCATATAGAGGTGCCCTCAAGGATAAGGGTAAAGGAAAGAAAATTATAGCTTAA 1746 0.4404 MGCVISREVSSGIISEVKEEKSLSVGSNKKAEEVSTSRAEGNGVEVQNGEKVKEKEEKVGDDGVRRPKGERRRSKPNPRLSNPPKHLQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDTLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLINDEGILKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATEYGVALDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSEEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPSALPLIDTLLAIDPAERKSASHALRSEFFTTEPYACDPSSLPKYSPTKEMDVKRRDDEARRLRAAGKAHADGGKKHRTRDRAVKAVPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPPDVPLGSTSYTFSKEPFQTWSGPIGNPASIGVTKRKKHAASDALDLPKPYRGALKDKGKGKKIIA* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01796 581 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Rops6g01796 581 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01796 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Rops6g01796 581 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01796 581 PANTHER CELL DIVISION PROTEIN KINASE 117 407 - -
Rops6g01796 581 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
Rops6g01796 581 FunFam probable serine/threonine-protein kinase At1g54610 106 201 - -
Rops6g01796 581 CDD STKc_CDK9_like 119 403 - -
Rops6g01796 581 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01796 581 FunFam probable serine/threonine-protein kinase At1g54610 202 443 - -
Rops6g01796 581 Gene3D Transferase(Phosphotransferase) domain 1 202 442 - -
Rops6g01796 581 MobiDBLite consensus disorder prediction 47 77 - -
Rops6g01796 581 MobiDBLite consensus disorder prediction 18 91 - -
Rops6g01796 581 SUPERFAMILY Protein kinase-like (PK-like) 113 410 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01796 Rops-Chr6 35676711 35682826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01796 111 441 Core Cell Cycle Gene Families AT5G10270 52.161 4.54e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops6g01796 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01796 K08819 - gmx:100817289 1011.13