Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01777 ATGCTTTCGCCGTTGGTTTCTTGGATCCTGTCTCCCTCATCATCCTCTTCCTCCTCCTCATCAGAAGAAGAAGAAAGTCTTGACATTAACACTACTGACGAATCAGACTATGAAAACGACAATGTCGCCAACGAAGACCAAACAGACAACGTGGAAGATGACGAGAACGACCATTTTCTCAGTTCACACGATGTCGATGATGACACCATCCCCGTTGCGCTCGCCGTTCCTGATGCCTCCCCAGCCGTGACGGTGGCCTTCCCCGCCGCCACTGCCGCAGCCGCCAACATAGCAACACGCTCGAAACGACAGCGCAGCAACCCCTCCAAGTATTCCGGCAGCGTAAGACAGTATCAGAGGCTGTGGACAAAGGAGGACGAGATGGAACTATTGAAGGGATACCTTGATTACATCAAGCATCAAGGAAAGTCAACCACCTCTCTCCAAAACGACGTAGCTTCATTGTATGATCACGTGAGACCTAAACTCAACGTGAGTTTCAATAAGAATCAGTTTGTTGAGAAGCTGCGTCGGTTAAAGAGAAAACACAAGATGGTTTTGGATAAAAACAAGGAGGTTCAGGTTCAATTCAAGAACCCCCAGGAGCAGGCTATTTTTGAAATTTCCCATAAGATTTGGGGCAATGACATGGACCATGATGCTTTGGATGGTGATGAATCAAGACCTGTTCCTGAAAGTCATGATCTTTTGGCCGATGTTAATGTGAAGACTGAACAAGTTGATGATTGTGATGAAATAGACAAAAGGGTGCCAAAGCGGTTGCGGTTTATTACAGATGATGTGAACACAATAAATGACCAGAACAATGGTGATGCTGCTACTACTAGCTTAAAGGGCTTCATTGAGGAAACCATGAGGTCCTGTTTCCCGCCATTGCTGAAGGAAGAATTGGATGATGCTCAGGAAGGGCCACTTGGTGCGTCAGCAATGCCATCATGTCCTGGGGAAGTGGGTGATGAGGAATGGACAAAAAGGAGGATTGTGGAGCTGCAGGTGTATTTGAATCGGTTGGAGGTGTTGCAGGATCAGATCAAAACTAGATTGGAGGAGTTGCGGTCTAGCGGAGGTTGA 1092 0.4716 MLSPLVSWILSPSSSSSSSSSEEEESLDINTTDESDYENDNVANEDQTDNVEDDENDHFLSSHDVDDDTIPVALAVPDASPAVTVAFPAATAAAANIATRSKRQRSNPSKYSGSVRQYQRLWTKEDEMELLKGYLDYIKHQGKSTTSLQNDVASLYDHVRPKLNVSFNKNQFVEKLRRLKRKHKMVLDKNKEVQVQFKNPQEQAIFEISHKIWGNDMDHDALDGDESRPVPESHDLLADVNVKTEQVDDCDEIDKRVPKRLRFITDDVNTINDQNNGDAATTSLKGFIEETMRSCFPPLLKEELDDAQEGPLGASAMPSCPGEVGDEEWTKRRIVELQVYLNRLEVLQDQIKTRLEELRSSGG* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01777 363 Coils Coil 341 361 - -
Rops6g01777 363 Coils Coil 176 196 - -
Rops6g01777 363 MobiDBLite consensus disorder prediction 26 53 - -
Rops6g01777 363 MobiDBLite consensus disorder prediction 1 65 - -
Rops6g01777 363 Pfam Protein of unknown function, DUF573 119 214 IPR007592 GO:0006355
Rops6g01777 363 PANTHER BNAANNG10740D PROTEIN-RELATED 13 357 IPR007592 GO:0006355
Rops6g01777 363 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01777 Rops-Chr6 35455089 35456375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01777 70 360 GeBP Transcription Factor Family AT5G28040 33.518 2.62e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Rops6g01777 DUF573 6.3e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01777 - - gmx:102662842 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04078 8 82599883 82601429 Rops6g01777 6 35455089 35456375 PCT