Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01765 ATGTTCGATGGAGTCCCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCACTACCACTTCACTTACCTTTCCCTCTCCATGCTTCTACTGCCCCAAATAGCTTCCTTACTTTTGATCCTTATAACCCATCTCATCAATTGCCACTCCAACCCACCAATCTCTTGCACCCATTACACCACCAATCTTCCACCCACAAAGATGAAGAGAAGGAAGAAAATAGTACTGTGCCGATGAACTTGGAAATTGAAAGAGATCAAAGACAACTACCTGATCAGCTGATTGATCCTTGGACTAATGACGAAGTGCTTGCTCTTTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAGTTCACTTGGGAACAGGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGAAGTGCAGAGAAGTGCAAAGAGAAGTTTGAAGAAGAAAGTAGATATTTCAACAACATTAATTACGCCAAGAATAATTATCGGTTTCTTAGTGAGCTTGAAGAGCTTTATCAAAACCCTGATCATCATCAAATTGGGACTGAAAAGACCTTGGAAAAACCAAGCGAGGGACAGGACCAGATGGGCCATGCATTGGAAGAGGATTCAAGAAACGTGGTGACAAAACAAGACGAGCAAATTATTAGTGACGAGGTGGTGGTGGAAAAAACAAAGGACCAGAAGAGGAAGAGAGTTGATGGGTTTGAAGTGTTCAAGGGTTTCTGTGAGAGCATCGTGCACAAGATGATGGCTCAACAAGAAGAGATGCACAACAAACTCCTTGAAGATATGTTGAGAAGAGATGAAGAGAAGTTTACAAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGATAAAATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCTGGTGATAGACAAGCCAACATAATTGAATTCTTGAAGAAATTCTCAGCAAGCCAGAGCTTTGGAGACCCAAATGGAAAAGACAAACCCAAGGTAACAAATACTCTTGTTACTTCTTCCCCGTTGCACTCCCAAAACCCTAATCCTTCTGCTGGAGACCCAACACCTTCTTCTACTATGATTCTAAATCATCCAAGTATGGGTACTTCTTCTGGTACTTGTGGTGCACTGGCAACAGAAAACCCTAGCTCAAGTCTTGCCCATGACACTTTACAAGTTCCTTCTTCTTCCACTTCAGCTCCAGTGCCACACAACCCTAGCCAGAGTAATGCACTAGAGACAAATTCAGTTTCCAGTAAAGCCTCCTCCATCACTGAGAAAGATGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGTTGGCACTCATAAACCTCAGATGCACCAGTGTAAACAACAACAACAACAATGAGGACAAGGAAGGAAACAAGGCACCTCTATGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAAAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGCCAATAAGAAGAGGTCACTTGATTCTAGGACTTGTCCCTACTTTCATCAACTGAGCAATCTGTATAATCAAGGAAAACTTGTTCCACAATCTGAAAGGTTAGAAAGCCACTTGAATGTGCCAGCAAATCCTGAGGAAGTGTCACCAGATCAAACCCCAGCTGAGTCTGGTGGTTTCACTGTGCAGCAGGTTGATCATGGAGGTGAGAAAACTTCGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1758 0.43 MFDGVPDQFHQFITPRTSLPLHLPFPLHASTAPNSFLTFDPYNPSHQLPLQPTNLLHPLHHQSSTHKDEEKEENSTVPMNLEIERDQRQLPDQLIDPWTNDEVLALLRIRSSMESWFPEFTWEQVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYAKNNYRFLSELEELYQNPDHHQIGTEKTLEKPSEGQDQMGHALEEDSRNVVTKQDEQIISDEVVVEKTKDQKRKRVDGFEVFKGFCESIVHKMMAQQEEMHNKLLEDMLRRDEEKFTREEAWKKQEMDKMNKELEMMAREQAIAGDRQANIIEFLKKFSASQSFGDPNGKDKPKVTNTLVTSSPLHSQNPNPSAGDPTPSSTMILNHPSMGTSSGTCGALATENPSSSLAHDTLQVPSSSTSAPVPHNPSQSNALETNSVSSKASSITEKDDVGRRWPRDEVLALINLRCTSVNNNNNNEDKEGNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANKKRSLDSRTCPYFHQLSNLYNQGKLVPQSERLESHLNVPANPEEVSPDQTPAESGGFTVQQVDHGGEKTSMQVPSLDFDQF* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01765 585 PANTHER FI21293P1 62 568 - -
Rops6g01765 585 MobiDBLite consensus disorder prediction 547 585 - -
Rops6g01765 585 ProSiteProfiles Myb-like domain profile. 97 149 IPR001005 -
Rops6g01765 585 MobiDBLite consensus disorder prediction 319 431 - -
Rops6g01765 585 Pfam Myb/SANT-like DNA-binding domain 96 159 IPR044822 -
Rops6g01765 585 Pfam Myb/SANT-like DNA-binding domain 432 522 IPR044822 -
Rops6g01765 585 ProSiteProfiles Myb-like domain profile. 433 494 IPR001005 -
Rops6g01765 585 Coils Coil 252 272 - -
Rops6g01765 585 FunFam Trihelix transcription factor GT-2 98 154 - -
Rops6g01765 585 CDD GT1 432 501 - -
Rops6g01765 585 Gene3D - 434 499 - -
Rops6g01765 585 Gene3D - 98 154 - -
Rops6g01765 585 FunFam Trihelix transcription factor GTL2 434 499 - -
Rops6g01765 585 MobiDBLite consensus disorder prediction 331 424 - -
Rops6g01765 585 MobiDBLite consensus disorder prediction 543 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01765 Rops-Chr6 35326873 35329316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01765 1 526 Trihelix Transcription Factor Family AT5G28300 38.411 9.58e-98 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops6g01765 Myb_DNA-bind_4 3.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01765 - - gmx:100804367 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01765 6 35326873 35329316 Rops6g01765 6 35326873 35329316 ECH
Rops8g04089 8 82757830 82760096 Rops6g01765 6 35326873 35329316 PCT