Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01763 ATGCCTCGCACTTCTCGCGTTAGCGAACATGGTATAATGCCTGTGCCAGTCTTGTCCATTCCATGCCCATTAAACTGGAATGGCGAAAGAGCTTCTTCTGCAACTTCTTCATCTGCTGCTTCTTCTTTCCGAACAACGGTGTCATTTTGCTGCTCCCCTGCCAATCTTCAACTTCGCATTCTCCGCTTTGTGACTCCTTCGCTTCCTTCTACATTTTCAATCCCCTGGATCCCTTCAACTTCTTACACACCACCGACTCACTCAACTCAGTATGAAATACTTGAGCAAATAGGAAAAGGTGCTTTTGGGTCCGCGCTTCTTGTGAGGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGACTTGCCCGCCAAACTGAGCGCTCTCGAAGATCTGCACACCTGGAGATGGAGCTTATCTCTAAATTACGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAGAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCGGAAGCTATAAAGAAAGCTAACGGTGTTCTGTTTCCAGAGGAGAAACTTTGCAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGAGACATACGTCTGGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTAGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTTCTTGCTGATATACCTTATGGTTCAAAATCAGATATTTGGTCCTTGGGATGTTGTGTATATGAAATGACAGCACTTAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATCAACAAGATTAATAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTTCAGAGCTGCTTGGGCACCCACATCTTCAATCTTATGTTGTTAAGATCCATCTCAAAATCAATAGCCCCAGGCGAAGTACATTACCCGTTCATTGGCCAGAATCAAACTACGTGAAGAAAACTAGATTTTTGGTGCCAGAAGATGATTCTGTTTCCATCTATAGGGATAAGCGGCATTCTTTCAGCAATGATCGGACTCTAAACCCTAGTGTATCAGGAGCTGATCAAGATTCTGTATGCTCTACACTAGAAATAGATTGTACTCCTGATCATTTGAATCAAAGGTTAGCAGAACTATGTACCAGAGATAGCCGTGAAGTGAAGTCAATGCATAAGCCTGTTGTTTCCAGAACTTCCAGTATTGCTAAGACTCCAAGATTCACTTCATCAAAAGTTTCTGCCACCAAGAAGAAATCAATAGAACCCTCAAAGAATCATCAGGTGGTAAGGCAAGCTGTTCCTGTTTCACACAATAGCACAAAATCTGCTCATACAAATCGCAGAGCATCATTTCCACTGCCAGCAAGGGGTGGTACTAGGCAGCCTCCTTACAGGCACGGTGCTGGTTTGCTTAGCCACGTGTCTTCGCCAGATATCTCAGTTAACTCTCCCCGCATTGACAAGATAGCCGAATTCCCATTAGCATCATATGAAGATTCTTTGTTCCCTATCAATAGAACATCAACCTCTGCACAAGGTTCCTCAGGTTTCGCATCCCACGACAATCATTCAACTGTAATAGACAAATGCACAGTAGAGGTATGTGATAGAGCCTCTATAAGGCCTAGTTGTACGGATACTTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATCGATGAGGAAAAATGTGGTTCCTCGGATAAAAATGCAACAGCAGGTGCATCAAGCCGCACCTCTTCAGACTCGCGATGCCGACAGTTTGACACTTCATCATACCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAGCAAGCAAGGTATGATGAACTCGGGGTTTTGTTGAAACCATTTGGGCCTGGGAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAATAATCTCAACCCGGAAGAATGCCTGTAA 2136 0.4359 MPRTSRVSEHGIMPVPVLSIPCPLNWNGERASSATSSSAASSFRTTVSFCCSPANLQLRILRFVTPSLPSTFSIPWIPSTSYTPPTHSTQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMTALKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQSYVVKIHLKINSPRRSTLPVHWPESNYVKKTRFLVPEDDSVSIYRDKRHSFSNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLAELCTRDSREVKSMHKPVVSRTSSIAKTPRFTSSKVSATKKKSIEPSKNHQVVRQAVPVSHNSTKSAHTNRRASFPLPARGGTRQPPYRHGAGLLSHVSSPDISVNSPRIDKIAEFPLASYEDSLFPINRTSTSAQGSSGFASHDNHSTVIDKCTVEVCDRASIRPSCTDTWQGIKRSMLKEIDEEKCGSSDKNATAGASSRTSSDSRCRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENNLNPEECL* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01763 711 MobiDBLite consensus disorder prediction 481 503 - -
Rops6g01763 711 MobiDBLite consensus disorder prediction 618 643 - -
Rops6g01763 711 MobiDBLite consensus disorder prediction 461 516 - -
Rops6g01763 711 FunFam Serine/threonine-protein kinase Nek3 173 419 - -
Rops6g01763 711 SUPERFAMILY Protein kinase-like (PK-like) 69 383 IPR011009 -
Rops6g01763 711 ProSiteProfiles Protein kinase domain profile. 91 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01763 711 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 90 661 - -
Rops6g01763 711 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Rops6g01763 711 SMART serkin_6 91 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01763 711 CDD STKc_Nek 90 345 - -
Rops6g01763 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Rops6g01763 711 Pfam Protein kinase domain 91 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01763 711 MobiDBLite consensus disorder prediction 625 643 - -
Rops6g01763 711 Gene3D Phosphorylase Kinase; domain 1 79 170 - -
Rops6g01763 711 FunFam Serine/threonine-protein kinase Nek2 88 170 - -
Rops6g01763 711 Gene3D Transferase(Phosphotransferase) domain 1 171 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01763 Rops-Chr6 35303470 35319270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01763 83 347 MAP Kinase Kinase Kinase AT1G53570 30.741 1.33e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops6g01763 Pkinase 3.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01763 K08857 - gmx:100804898 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01763 6 35303470 35319270 Rops6g01763 6 35303470 35319270 ECH
Rops8g04090 8 82776369 82787289 Rops6g01763 6 35303470 35319270 PCT