Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01760 ATGCAAATTCTCTCCCTTGTTTCTACATCCAGCGGCAGCGGCAGCGAAGGAGTCGTTGGTGTAAAGTTCTCGGAGGTTGCTCAAATTTCCCTCAACCCTTCCTCATCCCCTGTACCTACAGCTTCCCCCACAAATCCAAAAGAGCAAAAGGTTGCTACTATGTGCAAGGAGAGGCTTCATGAGATTGTGAAGGAAGAGATTCATGAAGCAAAAGAGAATTTGGAATGGAAATCAACAATGAAACAAGGTTTTGCTCACATGGACGATGAGGTTCTAAAATGGAACCAAAGTAACCAAACCTTTACTTGTAGATGCAAGCTTCAAACTCCTCACCGTGACGTCGTGAGATCCACCGCTGTCGTCGCCGTCATGACACCGGACAAGCTCATTGTCTCCAACTGCGGCGACTCACGCGCCGTCCTTTGCCGGAAAGGCGTCGCCATCCCTCTCTCCTCCAATCACAAGGATACTTCTCTTTTTCCTTTCCTTAACTTTCTCGAGAAACAAACACATAATCAATCCTATACCAATGCTCTCTCAAACCACTTCTCATCCTCTTCTCTTCACACATTATCTCAAACTCTTGTCTTCCCCAATCTCTTTGTTCTCCTTCTGCACAGAATGGGAAGCACTGGAAAAAGTGACTATGGTGCATACACCTATGCTGACCTTGAGAGAGAGCCTTACTGGCCATCAGAAAAGCTTAGGATTTCCATCACTGGAGCTGGCGGTTTTATTGCATCACACATTGCACGGCGCCTCAAGACAGAGGGACATTACATTATTGCTTCTGACTGGAAGAAAAATGAGCACATGACTGAGGACATGTTTTGTGATGAATTCCATCTTGTCGATCTCAGGGTCATGGATAACTGCTTGAAGGTAACTCAGGGGGTTGACCATGTCTTCAATCTTGCTGCTGACATGGGTGGGATGGGTTTTATTCAGTCCAACCACTCTGTCATTATGTACAACAACACAATGATTAGTTTCAACATGATTGAGGCTGGCAGGATTAACGGCATTAAGAGGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTTAAACAGTTGGAAACTAATGTGAGCTTGAAGGAGTCTGATGCATGGCCTGCTGAGCCACAAGATGCATATGGACTAGAAAAGCTTGCAACAGAGGAGTTATGCAAGCACTATAATAAAGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAATATATATGGCCCTTTTGGGACATGGAAAGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAACAATCACTTCCACTGACAGATTTGAGATGTGGGGAGATGGTTTGCAAACACGATCTTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGGTTGACTAAATCCGATTTTCGTGAGCCAGTAAATATTGGAAGTGATGAGATGGTCAGCATGAATGAGATGGCTGAGATTGTTCTTAGCTTTGAGAACAAGAATATTCCTATTCATCACATTCCTGGCCCAGAGGGTGTTCGTGGTCGTAACTCAGACAATACACTAATAAAAGAGAAACTTGGCTGGGCTCCATCAATGAAATTGAAGGATGGGCTGAGGATTACATACTTCTGGATTAAGGAGCAGCTCGAGAAGGAGAAGGCTCGAGGTATTGATCTATCAACATATGGGACATCCAAAGTGGTGCAAACCCAAGCCCCTGTTCAACTAGGCTCACTTCGGGCAGCAGACGGCAAAGAATGA 1752 0.4481 MQILSLVSTSSGSGSEGVVGVKFSEVAQISLNPSSSPVPTASPTNPKEQKVATMCKERLHEIVKEEIHEAKENLEWKSTMKQGFAHMDDEVLKWNQSNQTFTCRCKLQTPHRDVVRSTAVVAVMTPDKLIVSNCGDSRAVLCRKGVAIPLSSNHKDTSLFPFLNFLEKQTHNQSYTNALSNHFSSSSLHTLSQTLVFPNLFVLLLHRMGSTGKSDYGAYTYADLEREPYWPSEKLRISITGAGGFIASHIARRLKTEGHYIIASDWKKNEHMTEDMFCDEFHLVDLRVMDNCLKVTQGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAGRINGIKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTITSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKNIPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQLEKEKARGIDLSTYGTSKVVQTQAPVQLGSLRAADGKE* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01760 583 Gene3D - 48 169 IPR036457 -
Rops6g01760 583 SMART PP2C_4 8 324 IPR001932 -
Rops6g01760 583 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 231 548 IPR036291 -
Rops6g01760 583 CDD PP2Cc 50 155 IPR001932 -
Rops6g01760 583 CDD GME-like_SDR_e 235 557 IPR033890 GO:0047918|GO:0051287
Rops6g01760 583 Pfam NAD dependent epimerase/dehydratase family 237 476 IPR001509 -
Rops6g01760 583 Gene3D - 239 528 - -
Rops6g01760 583 Pfam Protein phosphatase 2C 49 156 IPR001932 -
Rops6g01760 583 Gene3D - 309 541 - -
Rops6g01760 583 PANTHER EPIMERASE-RELATED 233 549 - -
Rops6g01760 583 SUPERFAMILY PP2C-like 50 160 IPR036457 -
Rops6g01760 583 ProSiteProfiles PPM-type phosphatase domain profile. 3 326 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01760 Rops-Chr6 35255177 35263891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01760 51 155 PP2C-type Phosphatase Gene Family AT1G07430 58.095 8.55e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01760 K10046 - gmx:100780764 747.658