Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01757 ATGGCGGGTAATTGCTCAGAGGGATTAGGCGACGATTTCTTCGAACAGATCTTAGCAGTTCCTGAGTCCTCAGTGGGTTATGGCAGAACCATGGCGAGTGATGTTGGAATGTTGCAGTTAGGCTCCACAAATAGTGCTTTGGGCTTGAATTTGGAACAAGCTGGTTTTCTCAGACACAACACACGCTTTGTTGATGGCAGCATTAACAATAACCAGCAGCATCACCAACAACAACACCTCCGTCTCCATAACAACACCACTTCATCATCCCCTTCTACTATAGGAATCACCACAGATCGGGATTCTATGCATGTGAGGGGTTTGTTTTCAACGTTTGGACAATTGCATATTCCTACTCATCCTCAGTCTGTTCGCCCCACACTGCCATCTCCTCCACCACCTGCTCAACCCCATCTCCACCTCCACCATCACCATCACCACCAGCAGCCCTTTCAGAGCCAGCCGCTAACTCCGGTGTCTGTTGCTGCTATGCCACAACCACCTGGTATCCGCCCTCGAGTGAGAGCAAGAAGAGGGCAAGCTACAGACCCCCACAGTATTGCTGAGAGGTTACGTCGTGAAAGAATCGCTGAAAGAATGAGGGCATTGCAGGAATTAGTTCCCAGCATCAACAAGACGGACAGAGCAGCGATGCTTGATGAAATTGTGGATTATGTGAAGTTCCTCAGGCTCCAGGTTAAGGTCTTGAGCATGAGTAGACTGGGTGGAGCTGGTGCAGTTGCTCAACTTGTGTCTGATGTTCCCCTTACTGCAGTGGAGGGGGAGGACATAGAAGGTGGAGCCAAGCAGCAAGCCTGGTCCAAGTGGTCCAACGATGGCACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTGGGAGCAGCTATGCAATTTCTTCAGTCGAAGGCACTTTGTATCATGCCAGTTTCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAAGCATCAAATATCATCAAGCCTGAATCAAACAACCACTCTTAG 1011 0.4896 MAGNCSEGLGDDFFEQILAVPESSVGYGRTMASDVGMLQLGSTNSALGLNLEQAGFLRHNTRFVDGSINNNQQHHQQQHLRLHNNTTSSSPSTIGITTDRDSMHVRGLFSTFGQLHIPTHPQSVRPTLPSPPPPAQPHLHLHHHHHHQQPFQSQPLTPVSVAAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMRALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVSDVPLTAVEGEDIEGGAKQQAWSKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPVSLASAIFRMPQSEASNIIKPESNNHS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01757 336 MobiDBLite consensus disorder prediction 119 184 - -
Rops6g01757 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983
Rops6g01757 336 Gene3D - 175 237 IPR036638 GO:0046983
Rops6g01757 336 SMART finulus 186 235 IPR011598 GO:0046983
Rops6g01757 336 Pfam Helix-loop-helix DNA-binding domain 185 229 IPR011598 GO:0046983
Rops6g01757 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 239 IPR036638 GO:0046983
Rops6g01757 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 314 - -
Rops6g01757 336 FunFam Basic helix-loop-helix transcription factor 175 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01757 Rops-Chr6 35227445 35231900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01757 151 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.514 1.27e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g01757 HLH 9.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01757 - - gmx:100807570 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01757 6 35227445 35231900 Rops6g01757 6 35227445 35231900 ECH