Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01756 ATGACAAGCGTGGTGGACGCAGAGCGAGACAAGTACAGCATGATAAATTTTGAAGAGACCGAGTTACGACTCGGTCTACCTGGAGGGTCTGCTGCTAATGATCATGGCGAGTTATCTCTCAAGGGAAGTAGTGGTGGGAAGAGAGGTTTCTCAGAAACTGCTAATGTGGATTTGAAGCTTAATCTTTCTTCCACTAACGATTTAGCCTCTGCCTCTGTTTCACCCTCTACTGTTGCTGCGACCAAGGGTAAAGAGAAAACTACTACTGCTGCTGCTGCTGCAGCTGCTCGTGCTAATGACCCAGCAAAACCACCTGCCAAGGCACAAGTGGTGGGTTGGCCCCCAGTTCGATCCTTCAGAAAGAACATAGTGAATAATAATGTTCAAAAGAGCAATAATGAAGAAGCAGAGAAGAACAGTGGAGCAGCGTTTGTGAAGGTGAGCATGGATGGTGCACCATATCTACGCAAGGTGGATCTCAAGTTGTACAAGAGTTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTCAGTTCCTTCACCATAGGCCATTGTGGGTCCCAAGGCATGAAGGACTTCATGAATGAGAGCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGTGACTGGATGCTCGTGGGTGACGTACCCTGGCAAATGTTCGTTGAATCGTGCAAGCGCCTTCGCATAATGAAAGGTTCTGAGGCAATCGGGCTAGCACCAAGGGCAGTGGCAAAGTGCAAGAACAGAAGCTGA 783 0.4777 MTSVVDAERDKYSMINFEETELRLGLPGGSAANDHGELSLKGSSGGKRGFSETANVDLKLNLSSTNDLASASVSPSTVAATKGKEKTTTAAAAAAARANDPAKPPAKAQVVGWPPVRSFRKNIVNNNVQKSNNEEAEKNSGAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIGHCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAVAKCKNRS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01756 260 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 247 IPR003311 GO:0005634|GO:0006355
Rops6g01756 260 FunFam Auxin-responsive protein 137 252 - -
Rops6g01756 260 SUPERFAMILY CAD & PB1 domains 137 241 - -
Rops6g01756 260 Gene3D - 136 254 - -
Rops6g01756 260 Pfam AUX/IAA family 19 251 IPR033389 -
Rops6g01756 260 ProSiteProfiles PB1 domain profile. 142 242 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01756 Rops-Chr6 35209375 35212170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01756 131 245 B3 DNA Binding Superfamily AT3G61830 32.174 1.42e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops6g01756 AUX_IAA 3.2e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01756 K14484 - cave:132171332 362.844