Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01752 ATGGTGGCGAAACTAAAGAGTGATACGCTACTACCATGCATGACATGCCCCCTTTGTCATAACCTCTTCAAAGATGCTACCACCATCTCTCTTTGCCTTCATACCTTTTGCAGGAAATGCATATATGAGAAATTCTCAGACGAGGAGATGGATTGCTGTCCAGTGTGCAAAATTGATCTAGGCTGCCTCCCAGTGGAAAAACTCAGGCCAGACCATAATTTGCAAGATATAAGGGCCAAAGTATTCCCTCCCAAGAGAAGAAATGTCAAGGCTCCTGAAGTTTTGCCTTCAATAACCTTGCCTGCAAAAAGGAAGGAAAGATCACTTTCGTCATTGGTGGTTAGTGCTCCCAAAGTTTCAATGCAAACTGGCTTTACAGGAAAGAGAACAAAAACCAGTACAAGAAAGGCTGCTGCATTGCGTGGATGCAATTTTATTCTTGAAGACTTCATAAAGAAGGAAGAAACGAATGATGAAGACAATATCGATTCTCCCATGGCTGAGCCTTCTAAGAAGCATAAGCCCAAAGAAGGTACAGAGAACAGTGTGGAACTTACAGAAGGGAAGGTTGATCTCTGGACACCATTGAATTGTCTAGTTGAAGCAGCCAACAGAACCAAGTCCTCCAGGACAAATTCACAAACAATTCCTTTTGCTAAATTAGAGTCTCCAACTACTCCTCATGGTGGACTAGATACATCTAAAATTACAACCAAAACAGACATACCTGCTTCTGTACAGAGTGAATTAAACATTCCTAAAACTAAAAATAAGGATAAGGGACATAAAACAATATTTGGAGATGACAAGGATGCAAACAGCTTGTCTTCAGGACCAGCGAAGAGAAGAAGGTTGCGTCCTGCTGGCCAGAAAAGAGTTGCAGCATCTGAGATGTCTGCCTCAGCCTCAGTCATGCAAGATGCAACAGGGGGCAAATGCAACAGAAAAAACAGTCCTATTTGGTTTTCTTTAGTTGCTTCAGAGGAGCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATAAAAGATGGTACTGTGCCTGTCTCACTTATACAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGTGAAACAGAGGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTCCCATCTCTTCAACTGGATAACTTAGTAGATCTGTGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCATCCGTAGGATCTTCGGCTAAGGATTTTGTGATGGTTTTGTCATATTGTCGAAAGGCCTTGCCTCCTTGA 1287 0.4258 MVAKLKSDTLLPCMTCPLCHNLFKDATTISLCLHTFCRKCIYEKFSDEEMDCCPVCKIDLGCLPVEKLRPDHNLQDIRAKVFPPKRRNVKAPEVLPSITLPAKRKERSLSSLVVSAPKVSMQTGFTGKRTKTSTRKAAALRGCNFILEDFIKKEETNDEDNIDSPMAEPSKKHKPKEGTENSVELTEGKVDLWTPLNCLVEAANRTKSSRTNSQTIPFAKLESPTTPHGGLDTSKITTKTDIPASVQSELNIPKTKNKDKGHKTIFGDDKDANSLSSGPAKRRRLRPAGQKRVAASEMSASASVMQDATGGKCNRKNSPIWFSLVASEEQKGDVPLPQISACYLRIKDGTVPVSLIQKYLVKKLNLASETEVEIMCRGQPVLPSLQLDNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01752 428 CDD RING-HC_PCGF 14 56 - -
Rops6g01752 428 Gene3D - 300 403 - -
Rops6g01752 428 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Rops6g01752 428 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Rops6g01752 428 MobiDBLite consensus disorder prediction 219 300 - -
Rops6g01752 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 109 IPR013083 -
Rops6g01752 428 MobiDBLite consensus disorder prediction 253 269 - -
Rops6g01752 428 MobiDBLite consensus disorder prediction 156 184 - -
Rops6g01752 428 SUPERFAMILY RING/U-box 10 80 - -
Rops6g01752 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 426 IPR044807 GO:0004842
Rops6g01752 428 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Rops6g01752 428 MobiDBLite consensus disorder prediction 219 252 - -
Rops6g01752 428 SMART ring_2 16 56 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01752 Rops-Chr6 35160053 35165321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01752 1 347 C3H Transcription Factor Family AT2G30580 43.251 3.78e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01752 K16277 - gmx:100783999 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01752 6 35160053 35165321 Rops6g01752 6 35160053 35165321 ECH