Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01746 ATGTCCACCGCCGCGCAGACCAAATCCAAGGCCAAGAAGACGGCTGCGTCGAAGAAGCCATTCTCCCACCCTCCCTTCGCCGAGATGATAACGGACGCAATTGTAAGTCTGAAAGAGAGAACTGGTTCAAGCCAATACGCTATAACCAAGTTCATCGAGGCCAAGCACAAGGAATTGCCTCCTACCTTTAAGAAGCTTATTCTCACTCATCTCAAGAAGTCGGTGGCCGCCGGCAAGCTTGTTAAGGTGAAGAACTCATTCAAGCTCGCGCCGACTAAACCTGCTCCGGCTAAGGCCACCACCACTGCTGCTCCTGCCGCTGCTACCAAGAAGCCTAAAGCCGTGGCTAAGCCCAAAGCCAAGGCTGCTTCTTCCCAGGCAAAGCCCAAGCCCAAGCCCAAGCCGAAGGCCGTTGCGAAACCTAAGGCCAAGCCTGCTAAGGCAACAGCGGGGAAAAAGGTGGTTGCTAAGCCAGCAAGGAAGACGCCGGTAAAAGGTGTGAAGAAGCCTAAGAGTGTGAAATCGCCGGCAAAGAAAGCTAAGAAGTGA 549 0.5373 MSTAAQTKSKAKKTAASKKPFSHPPFAEMITDAIVSLKERTGSSQYAITKFIEAKHKELPPTFKKLILTHLKKSVAAGKLVKVKNSFKLAPTKPAPAKATTTAAPAAATKKPKAVAKPKAKAASSQAKPKPKPKPKAVAKPKAKPAKATAGKKVVAKPARKTPVKGVKKPKSVKSPAKKAKK* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01746 182 SUPERFAMILY "Winged helix" DNA-binding domain 19 99 IPR036390 -
Rops6g01746 182 CDD H15 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g01746 182 PANTHER HISTONE H1 7 177 - -
Rops6g01746 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 22 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g01746 182 SMART h15plus2 20 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g01746 182 PRINTS Histone H5 signature 140 157 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g01746 182 PRINTS Histone H5 signature 9 30 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g01746 182 PRINTS Histone H5 signature 107 121 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g01746 182 PRINTS Histone H5 signature 36 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g01746 182 MobiDBLite consensus disorder prediction 1 23 - -
Rops6g01746 182 Gene3D - 17 95 IPR036388 -
Rops6g01746 182 Pfam linker histone H1 and H5 family 23 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g01746 182 MobiDBLite consensus disorder prediction 158 182 - -
Rops6g01746 182 MobiDBLite consensus disorder prediction 88 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01746 Rops-Chr6 35120605 35121469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01746 24 89 Single Myb Histone (SMH) Gene Family AT1G72740 34.848 2.16e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01746 K11275 - gmx:100810590 135.191