Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01735 ATGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCTAAAGTGGAGAGTGAAGTTAGACAAGAGTTGAAGCAAACTCTTCAGAGGGATGATCTGGAAACTGCTGTTGCTGATGAGATGACTGCTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAGCTCCCTAGCCTTTACAAGTTGATTGAAAGAGAAGCTCCCAATGGTTGTTGCACTGAAGCATGGAAAACGAGAAATCATTGGGTTGGGTCTCAGGCAACTGCTGAAATTGCTAAGTCAATTGCTGATGCTGAGAAATATCTACAAGAAGAGAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGACGGTGCTAGTGGTTTTCTCCAAAAAAAAATTTGTCCTGAAACCCAGGAGCCTGTAAAGAAAGAAATTGAGGGGGACTGGGATCTGTTCAATAAAATAGTTTTTGATGGGAATGGTGTTGATGCTTCATTTGGCAGCAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCGCTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAAATTGATGATGTTGATGGCAATTCTACCGATCCATTTGTTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAGTTTAAAAAGGTCAAGGAAGAAGATGATGCAATTGTTGATAGGAAGCTTCAAATCCGTTTGAAACATAGGAGGCATCAAAAGAAAAATAAGCAGCGAGAAATGAGCACACCTACCCTGTCATCGGAGAGCCACATACAGAAGCCTTCATCTGTTGATCATTTTAAGCCTATTATGAAGGAAGGAACTAGTGATGATGGGAAAATTGTGTCTGACGTCGACGAAGTTGTATGTCTGAATATGGAGACCGATAAAATTGAAGGTTTTGATGCCAGTTCTCATCCTGACAAAGAAAAGCCTACGAGTATGGGCAATTTGTCAGATCCTCCCAAATCTTCATTGGGTGATGTTATTGAACAGAGAGGAAGCAAGCGTCTAAATGATGGTGAGCTTGATGCTGATATTAAAAAGCATAAAACTGTTATTGTCGACAGTGATGATGAAGCAAATGCCGAGATAGATTGCAATACCCTAGAGGATCAATCAAAGATAAAAGGTATATGTAACAGTGGTGCTGATGCTCTTCCTTCAGAGTGTCTGGATGAGAAATTTTGCTGCACAGTTTGTGATAAAATGGCACTTGAAGTGCACCCACACCCTCTTTTGAAAGTGATTATTTGTGGAGATTGCAATTGCTTAATGAAAGAAGAGACACATGCAAAGGACCTGGGTCATGATTGTTCCGAGTGTTACTGTGCGTGGTGTAGAGGAAGCAGTGAATTAGTTAATTGCAAATTATGCAAGATATTGTTCTGCACCAAATGTATAAAGAAGAATCTTGGTATAGAGTTTGTTGCTGAAGCTCAGGCCACTGGCTGGCATTGTTGTTGTTGCCGTCCAAATCTTCTGCAAAGACACTCATTGCAACTAGAGAAAGCTATGGCTGCTGCTGATATACCAGTTTCCAGTTCTGGTAGTGATTCAGATAATTCAGATGGAGAGATTAATGTTACAGTCAGCTCTAAACGAAGACACAAAAAGAAGATTCGGAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCCTTGCGAGTACAGTTTTCTGCCTCATCAAGTGAGATGAGCTCCGCTGGCTGTAATGGGAGTTTATCTGAAGGTGCAAGCATTGAAATTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCCCATCAGATTGTAGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGGTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTCTTCAGGTGATAGCTTTCTTGTACACTGCGATGAGAAGTGTTGATTTGGGGTTAAGAACTGCACTTATAGTCACTCCTGTCAATGTGCTACATAATTGGCGGCAGGAGTTCATCAAATGGAGACCTTCTGAATTAAAGCCACTCAGGGTCTTCATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAATTGCTTGCAAAATGGAGAGCTAAAGGTGGTGTCTTTTTGATAGGCTATACCGCTTTCCGAAATTTATCTTTTGGAAAGAACGTGAAAGAGCGGCACATGGCCAGGGAAATTTGCCAAGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAGGCCCATATGATAAAAAATACCAAGGCTGACATAACTCAAGCCTTGAAGCAAGTAAGAAGCCAGAGAAGAATTGCACTTACCGGATCGCCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTACCAAAATCCTATAGAGAATGGTCAACACACTAATTCTACTCTGACTGATGTAAAAATTATGAACCAAAGGTCTCATATCCTCTATGAACAGTTAAAAGGCTTCGTCCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTTCCGCCCAAAACTGTCTTTGTGATAACCGTCAAGCTTTCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTAATGTCAGGGCGCATCATGAAACGTTAAGAAAGAGAAGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTATGCAAGACATGAAGATGCTGTTGAGAATTTTCTTGTTGATGATAGCTCCAGTGACGAAAATTCTGATTCTAATGTGCTTGCTGGAGAGAAGATGAGGTATACAAATGATTTGCTGCAAAGGAAGGATGGTAATGGCTTTTTCGTAAAGGGTTGGTGGAAGGATCTTCTTCATGAAAAAATTTATAGAGAACTTGATCAGAGTGGCAAAATGGTTTTGCTAATAGATATACTAACCATGAGTTCTGATGTGGGTGATAAAGTGTTGGTTTTTAGTCAGAGCATACCAACCCTGGACCTCATCGAACTTTATCTCTCAAGGATACCTCGACATGGCAAACAAGGGAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGATTGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCATTTGAATAGGAGGGTAAAATGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATCAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGACAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACGAAGGAGGGGCTTGCTGCTAGAGTGGTTGATAGACAACAGGTGCATAGAACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGATCTAAGTCAAGAAAATGGGCATACACTAAAACATACAGGACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTAATGGAAAGCTTACTCAGCAAGCATCATCCTCGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCAAAAATCGCTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATGCCTGATCAAAAGCCAGAAATGTCAAAGGCAAAGCCCCAAGTATCAGAAACCCGCAGCATCTTACCAACTAAGCTAATGAATCGTTTCACGACACGGAAATGCACCAACCTTGCGCACTTGCTGACACTTAGAAGTCAGGGAACAAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCTCGGGAGATACGGTGGGAAGACTTGAAGAAATAG 4236 0.4186 MAAEAQEALEEESLAKVESEVRQELKQTLQRDDLETAVADEMTAFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEREAPNGCCTEAWKTRNHWVGSQATAEIAKSIADAEKYLQEERPVRRRHGKLLEDGASGFLQKKICPETQEPVKKEIEGDWDLFNKIVFDGNGVDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFVAAAIANERELDLSDEQRRQFKKVKEEDDAIVDRKLQIRLKHRRHQKKNKQREMSTPTLSSESHIQKPSSVDHFKPIMKEGTSDDGKIVSDVDEVVCLNMETDKIEGFDASSHPDKEKPTSMGNLSDPPKSSLGDVIEQRGSKRLNDGELDADIKKHKTVIVDSDDEANAEIDCNTLEDQSKIKGICNSGADALPSECLDEKFCCTVCDKMALEVHPHPLLKVIICGDCNCLMKEETHAKDLGHDCSECYCAWCRGSSELVNCKLCKILFCTKCIKKNLGIEFVAEAQATGWHCCCCRPNLLQRHSLQLEKAMAAADIPVSSSGSDSDNSDGEINVTVSSKRRHKKKIRRILDDAELGEETKKKIAIEKERQERLKSLRVQFSASSSEMSSAGCNGSLSEGASIEILGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTLQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRAQLLAKWRAKGGVFLIGYTAFRNLSFGKNVKERHMAREICQALQDGPDILVCDEAHMIKNTKADITQALKQVRSQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRYQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNVRAHHETLRKRSFFAGYQALARIWNHPGILQLTKEDKDYARHEDAVENFLVDDSSSDENSDSNVLAGEKMRYTNDLLQRKDGNGFFVKGWWKDLLHEKIYRELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRHGKQGKFWKKGKDWYRIDGRTESSERQKLVERFNEHLNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLADLSQENGHTLKHTGPHSNGSSYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYQKSLEWEEVQRVPLGESMPDQKPEMSKAKPQVSETRSILPTKLMNRFTTRKCTNLAHLLTLRSQGTKFGCSTVCGECAREIRWEDLKK* 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01735 1411 CDD ADDz_ATRX 424 522 - -
Rops6g01735 1411 Gene3D - 925 1270 IPR027417 -
Rops6g01735 1411 Pfam SNF2-related domain 683 984 IPR000330 GO:0005524|GO:0140658
Rops6g01735 1411 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 682 865 IPR014001 -
Rops6g01735 1411 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1069 1237 IPR001650 -
Rops6g01735 1411 SMART helicmild6 1099 1189 IPR001650 -
Rops6g01735 1411 Coils Coil 1296 1316 - -
Rops6g01735 1411 MobiDBLite consensus disorder prediction 543 562 - -
Rops6g01735 1411 Coils Coil 39 66 - -
Rops6g01735 1411 SMART ultradead3 656 877 IPR014001 -
Rops6g01735 1411 MobiDBLite consensus disorder prediction 1339 1358 - -
Rops6g01735 1411 MobiDBLite consensus disorder prediction 543 559 - -
Rops6g01735 1411 MobiDBLite consensus disorder prediction 329 358 - -
Rops6g01735 1411 ProSiteProfiles ADD domain profile. 416 548 IPR025766 -
Rops6g01735 1411 PANTHER RAD54-LIKE 2 1409 IPR044574 GO:0016887
Rops6g01735 1411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 914 IPR027417 -
Rops6g01735 1411 MobiDBLite consensus disorder prediction 276 290 - -
Rops6g01735 1411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 1253 IPR027417 -
Rops6g01735 1411 Pfam Helicase conserved C-terminal domain 1065 1189 IPR001650 -
Rops6g01735 1411 Gene3D - 633 914 IPR038718 -
Rops6g01735 1411 CDD SF2_C_SNF 1056 1200 - -
Rops6g01735 1411 MobiDBLite consensus disorder prediction 263 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01735 Rops-Chr6 34912878 34937935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01735 690 1242 RAD5 or RAD16-like Gene Family AT5G43530 25.157 1.04e-29 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops6g01735 SNF2_N 8.2e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01735 K10779 - gmx:100794911 2331.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01735 6 34912878 34937935 Rops6g01735 6 34912878 34937935 ECH