Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01731 ATGGCTCCCGATCCAAGAGTTTTTAAGGCCTATAATGCTATGAGGGTCTTAGGAATTTCTGAAGAAGACGTGAAGCCGGTATTGATACATTTGTTAAAAGTGTATGATAGAAAGTGGGAACTTATTGAAGAAGACAATTATCGGACACTAATAGATGCATACTTTGAGTTAGATGAAGATAAGCAAGCAGAATGTAAGAGGAAAACTCCAATCAGTAATCATGATGGAGAAAGACCAAAACAGAAACTGCACTTGGTAGATAGAGACGACCAAGTTTCATCAGTTCACAACTCAAAACGACTGTTGTCTAGAGAAGACACTGAAATACCTCCAAATACTTCTAAGCAGGAAATCATTAAACCATCTCGAACTCCCATGGGAGATATGAAGCCCACAACCAGTTCACTAGCATTGCAGACAAGGTTGAGCGAGGCAGAAAGGATCTCATGCGTGACTGCTAGAGATCGAAAATTGTATACTGAGACAGCATCATCTGCAGGGCATTGTGATAGAAAATTGTATCCTGAGACAGCATCATCTGCAAGGCATTGTGAAGATCCAACTGATGAACCTAGCTATCATCATATTCAGAGGAAAAATATAACAAGTGATCATTATCATAAGAAGCTTGTGACACTAGGAACTGCAAAAACTAACTTTCATCGTGGACCTGTTTCAACGAGTTACAATGGTGCATCTTATGCTTCAAATGGAAATCTTCATGTCAAATCTCTTCCAGCTGTGCATCAGAATATGCACAAGAAAGAAGATAGACCCCCATGCAATGATAACACCAGAACCAGCAGGGGTAATATTGATATTGCTTCTTCACCTTTGGGAGAAGTTAAAATATCTTTAAACTGTGATGCTGCCTTGGGACAACCAAACTTCCATATTCCTAATTTGGATGATGTTATAAAGTCCATGGAGGAGAAATACCAGAGGTCTTGCAAGATTGTGGAGCCCCAATTATTGAAGTTATTAAATGATTTCTGTGGAAGTTATTTGAAGTTGGGCTTGAATTCAAATAAAAAAGGGCCAAATCCCAAGTATGCCAATTCACAAAATGTGGTATTCATTGGTGACATAACAAAAGGTTCGGAAAATGTTAAAATATCATTATTATCTGACACTGGAAGTGAGGACTTGCCAAAGTTTAACTACATACCAAATAATATAATATATCAAAGTGCTAATGTAAATATTTCACTTGCTCGGATTGCCGATGAGGGTTGCTGTTCTGAATGTTCAGGCGACTGTCTTTCCTTATCATTTCCTTGTGCATGTTCACAAGAAACTGGTGGAGAGTTTGCTTACACTCCACGGGGTTTGTTAAAAGAAGAATTTTTAAAAGTTTGCATGTCTATGAAAATGGAACCTCAAGATCATCATTTTGTGTATTGTCAAGAATGCCCACTGGAGAGGTCTAAGAATGAGAACAAGGCCGAACCATGTAAGGGGCATCTGGTTCGGAAGTTCATAAAGGAATGCTGGAGGAAATGTGGATGTGAGATGCAATGTGGAAATCGGGTAGTGCAACGAGGTTTAAGATGTAAATTGCAGGTGTTCTTGACTCTACAAGGAAAGGGCTGGGGTGTTAGATCCCTAGAAGATTTGCCCAAGGGATGCTTTGTATGTGAATATGCTGGGGAAATATTAACTAATACAGAATTATATGAAAGGACTGTCCAGAATAGTGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGTTCAGAAGGAGTGTTAAAGGATGAGGAAGCACTATGCTTGGATGCAACATATAATGGGAATGTTGCAAGGTTTATCAATCATAGATGCTCTGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGATCGCCACTATTATCATCTTGCCCTCTTTACAAACAGAAATGTGAGAGCATATGAGGAGTTGACATGGGATTATGGTATTGATTTTGATGATCATGAACATCCTATCAAAGCATTTAAATGTTGCTGTGGAAGTGCCTTCTGCCGTGATAAGAAACAAAAAGGAACTAGATTATCGAAGAGTAAAAAACTCAAGGGTACATATTCACAGAAATAG 2094 0.3892 MAPDPRVFKAYNAMRVLGISEEDVKPVLIHLLKVYDRKWELIEEDNYRTLIDAYFELDEDKQAECKRKTPISNHDGERPKQKLHLVDRDDQVSSVHNSKRLLSREDTEIPPNTSKQEIIKPSRTPMGDMKPTTSSLALQTRLSEAERISCVTARDRKLYTETASSAGHCDRKLYPETASSARHCEDPTDEPSYHHIQRKNITSDHYHKKLVTLGTAKTNFHRGPVSTSYNGASYASNGNLHVKSLPAVHQNMHKKEDRPPCNDNTRTSRGNIDIASSPLGEVKISLNCDAALGQPNFHIPNLDDVIKSMEEKYQRSCKIVEPQLLKLLNDFCGSYLKLGLNSNKKGPNPKYANSQNVVFIGDITKGSENVKISLLSDTGSEDLPKFNYIPNNIIYQSANVNISLARIADEGCCSECSGDCLSLSFPCACSQETGGEFAYTPRGLLKEEFLKVCMSMKMEPQDHHFVYCQECPLERSKNENKAEPCKGHLVRKFIKECWRKCGCEMQCGNRVVQRGLRCKLQVFLTLQGKGWGVRSLEDLPKGCFVCEYAGEILTNTELYERTVQNSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNRNVRAYEELTWDYGIDFDDHEHPIKAFKCCCGSAFCRDKKQKGTRLSKSKKLKGTYSQK* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01731 697 ProSiteProfiles Pre-SET domain profile. 416 515 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g01731 697 SMART preset_2 360 502 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g01731 697 SMART set_7 518 658 IPR001214 GO:0005515
Rops6g01731 697 CDD SET_SETDB-like 384 652 - -
Rops6g01731 697 Gene3D - 1 60 IPR043017 -
Rops6g01731 697 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 683 - -
Rops6g01731 697 Pfam SET domain 530 652 IPR001214 GO:0005515
Rops6g01731 697 MobiDBLite consensus disorder prediction 103 132 - -
Rops6g01731 697 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 690 IPR025776 -
Rops6g01731 697 SUPERFAMILY SET domain 370 675 IPR046341 -
Rops6g01731 697 FunFam SET-domain containing protein lysine methyltransferase family protein 363 677 - -
Rops6g01731 697 Gene3D SET domain 363 677 IPR046341 -
Rops6g01731 697 ProSiteProfiles SET domain profile. 518 652 IPR001214 GO:0005515
Rops6g01731 697 Pfam Pre-SET motif 363 510 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g01731 697 Pfam Ubiquitin-binding WIYLD domain 5 59 IPR018848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01731 Rops-Chr6 34856577 34861860 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01731 494 675 C2H2 Transcription Factor Family AT2G23740 41.176 3.01e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g01731 Pre-SET 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01731 - - gsj:114402909 1060.06