Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01729 ATGGCTCCCGATCCAAGAGTTTTTAAGGCCTATAATGCTATGAGGGTCTTAGGAATTTCTGAAGAAGACGTGAAGCCGGTATTGATACATTTGTTAAAGGTGTATGATAGAAAGTGGGAACTTATTGAAGAAGACAATTATCGGACACTAATAGATGCATACTTTGAGTTAGACGAAGATAAGCAAGCGGAATGTAAGAGGAAAGCTCCAATCAGTAATCATGATGGAGAAAGACCAAAACAGAAACTGCACTTGGTAGATAGAGATGACCAAGTTTCATCAGTTCACAACTCAAAACAAGTGTTGTCTAGAGAAGACACTGAAATACCTTCAAAGACTTCTAAACAGGAAATCATTAAACCATCTCGAACTCCCATGGGACATATGAAGCCCACAACCAGCTCACGAGCATTGCAGACAAGGTTGAGCAAGGCAGAAAGGATCTCATGCGTGACTGCTAGAGATCGAAAATTGTATCCTGAGACAGCATCATCTGCAGGGCATTGTGATAGAAAATTGTATCCTGAGACAGCATCATCTGCAAGGCATTGTGAAGATCCAACTGATGAACCTAGGTATCATCATATTCAGAGGAAAAATATAACAAGTGATCATTATCATAAGAAGCTTGTGACACTAGGAACTGCAAAAACTAACTTTCATCGTGGACCTGTTTCAACGAGTTACAATGGTGCATCTGATGCTTCAAATGGAAATCTTCATGTCAAATCTCTGCCAGCTGTGCATCAGAATATGCGCAAGAAAGAAGATAGACCCCCATGCAATGATAACAGCAGAACCAGCAGGGGTAATATTGATATTGCTTCTTCACCTTTGGGAGAAGTTAAAATATCTTTAAACTGTGATGCTGCCTTGGGACAACCAAACTTCCATATTCCTAATTTGGATGATGTTATAAAGTCCATGGAGGAGAAATACCAGAGGTCTTGCAAGATTGTGGAGCCCCAATTATTGAAGTTATTAAATGATTTCTGTGGAAGTTATTTGAAGCTGGGCTTGAATTCAAATAAAAAAGGGCCAAATCCCAAGTATGCCAATTCACAAAATGTGGTATTCATTGGTGACATAACAAAAGGTTCGGAAAATGTTAAAATATCATTATTATCTGACACTGGAAGTGAGGACTTGCCAAAGTTTAACTACATACCAAATAATATAATATACCAAAGTGCTAATGTAAATATTTCACTTGCTCGGATTGCCGATGAGGGTTGCTGTTCTGAATGTTCAGGCGACTGTCTTTCCTTATCATTTCCTTGTGCATGTTCACAAGAAACTGGTGGAGAGTTTGCTTACACTCCACGGGGTTTGTTGAAAGAAGAATTTTTAAAAGTTTGCATGTCTATGAAAATGGAACCTCAAGATCATCATTTTGTGTATTGTCAAGAATGCCCACTGGAGAGGTCCAAGCATGAGAACAAGGCCGAGCCATGTAAGGGGCATCTGGTACGGAAGTTCATAAAGGAATGCTGGAGGAAATGTGGATGTGACATGCAATGTGGAAATCGGGTAGTGCAACGAGGTTTAAGATGTAAATTGCAGGTGTTCTTGACTCCACAAGGAAAGGACTGGGGTGTTAGATCCCTAGAAGATTTGCCCAAGGGATGCTTTGTATGTGAATATGCTGGGGAAATATTAACTAATACAGAATTATATGAAAGGACTGTCCAGAATAGTGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCAGAAGGAGTGTTAAAGGATGAGGAAGCACTATGCTTGGATGCATCATATAATGGGAATGTTGCAAGGTTTATCAATCATAGATGCTTTGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGATCGCCACTATTATCATCTTGCCCTCTTTACAAACAGAAATGTGAGAGCATATGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCAAGAACATCCTATCAAAGCATTTAAATGTTGCTGTGGAAGTGCCTTCTGCCGTGATAAGAAACAAAAAGGAACTATATTATCGAAGAGTAAAAAACTCAAGGGTACATATTCACAGAAATAG 2094 0.3949 MAPDPRVFKAYNAMRVLGISEEDVKPVLIHLLKVYDRKWELIEEDNYRTLIDAYFELDEDKQAECKRKAPISNHDGERPKQKLHLVDRDDQVSSVHNSKQVLSREDTEIPSKTSKQEIIKPSRTPMGHMKPTTSSRALQTRLSKAERISCVTARDRKLYPETASSAGHCDRKLYPETASSARHCEDPTDEPRYHHIQRKNITSDHYHKKLVTLGTAKTNFHRGPVSTSYNGASDASNGNLHVKSLPAVHQNMRKKEDRPPCNDNSRTSRGNIDIASSPLGEVKISLNCDAALGQPNFHIPNLDDVIKSMEEKYQRSCKIVEPQLLKLLNDFCGSYLKLGLNSNKKGPNPKYANSQNVVFIGDITKGSENVKISLLSDTGSEDLPKFNYIPNNIIYQSANVNISLARIADEGCCSECSGDCLSLSFPCACSQETGGEFAYTPRGLLKEEFLKVCMSMKMEPQDHHFVYCQECPLERSKHENKAEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTPQGKDWGVRSLEDLPKGCFVCEYAGEILTNTELYERTVQNSGNDRHTYPVTLDADWGSEGVLKDEEALCLDASYNGNVARFINHRCFDANLIDIPVEVETPDRHYYHLALFTNRNVRAYEELTWDYGIDFDDQEHPIKAFKCCCGSAFCRDKKQKGTILSKSKKLKGTYSQK* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01729 697 CDD SET_SETDB-like 384 652 - -
Rops6g01729 697 Gene3D - 1 60 IPR043017 -
Rops6g01729 697 ProSiteProfiles SET domain profile. 518 652 IPR001214 GO:0005515
Rops6g01729 697 Gene3D SET domain 363 677 IPR046341 -
Rops6g01729 697 Pfam SET domain 531 652 IPR001214 GO:0005515
Rops6g01729 697 Pfam Pre-SET motif 363 510 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g01729 697 MobiDBLite consensus disorder prediction 249 263 - -
Rops6g01729 697 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 682 - -
Rops6g01729 697 ProSiteProfiles Pre-SET domain profile. 416 515 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g01729 697 MobiDBLite consensus disorder prediction 88 115 - -
Rops6g01729 697 SUPERFAMILY SET domain 370 675 IPR046341 -
Rops6g01729 697 Pfam Ubiquitin-binding WIYLD domain 5 59 IPR018848 -
Rops6g01729 697 FunFam SET-domain containing protein lysine methyltransferase family protein 363 677 - -
Rops6g01729 697 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 691 IPR025776 -
Rops6g01729 697 SMART preset_2 360 502 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g01729 697 SMART set_7 518 658 IPR001214 GO:0005515
Rops6g01729 697 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01729 Rops-Chr6 34845330 34851009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01729 494 675 C2H2 Transcription Factor Family AT2G23740 39.572 2.05e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g01729 Pre-SET 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01729 - - gsj:114402909 1047.34