Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01728 ATGCCTTCGTCTTTTCCTTTTCTTCCCTCCTCCTCTATGCAGGCTGCATCAATAAATTATAATGTCAGAAGTGTTGGGCACATGTTTTCAACCCCTTCTGAATGCCCTGACAACGTCCCCTTTTCCTCTGTTTCGGAAACACAATCGACAACATTCACTTCTCACCCTCAAGGAAGTGATGATATTTCCTGGGGACCAGATCCATTTCAGGATATTCTTCAGTTTCCTGATAATGTTTCCATCCAGAATGATCACATGGAATATAGTGCTTCTCAGATATCTACTAACAATGCCAAAACAACTGATTTTGGGGAGTGGGTTGATCAGTTGTTGTCAGTTGATGATCACCCAAATTGGAGTCAATTGCTCAGTCATGATAATGTAGCTGAAACAAAATCAAAGGAGACCCAGGTTTCACAACAGCAGCATGTACCATCTAAAGAAGTTATTGATCTTCCTAATTCAATGTCAACTCCATCTACACCACAAACTAAATCTAGAATGCGATGGACTCCAGAACTTCATGAAGCTTTTGTGGAAGCAATCAATAAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGTCATCAGAAGGAATTCCTGAGAAAAAGTTGACTTCGATTGAAGAAATGAAGTTTCTAGACTTAAAAACGAGTAAGGGAATTACTGAAGCATTGCGATTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAAGTTGCAGATTCAAATTGAAAACCAAGGGAAGCATCTTCAAATGATGTTTGAGAAACAGATCAAAATGGATGAGCATTCTGCTCCACTATTGAACGTAGTGCTACCTTCTTCTCCAATTGACAAATTGGAAACCTCGAATGAGGGTCATGAGAAAATTGGAATCAACAGTAGCACTCTGGAAAACATGCCTGAAGAAAGTTCCCAGGATACAAGCACAAAGCAAAAGGGAGATGATGCTAAAGTTACTGACGAACATGAGCTGGGAGATGATCAATTTGCTGCACCACCCACAAAACGGGTGAAGAGTTGA 1134 0.4092 MPSSFPFLPSSSMQAASINYNVRSVGHMFSTPSECPDNVPFSSVSETQSTTFTSHPQGSDDISWGPDPFQDILQFPDNVSIQNDHMEYSASQISTNNAKTTDFGEWVDQLLSVDDHPNWSQLLSHDNVAETKSKETQVSQQQHVPSKEVIDLPNSMSTPSTPQTKSRMRWTPELHEAFVEAINKLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGIPEKKLTSIEEMKFLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKHLQMMFEKQIKMDEHSAPLLNVVLPSSPIDKLETSNEGHEKIGINSSTLENMPEESSQDTSTKQKGDDAKVTDEHELGDDQFAAPPTKRVKS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01728 377 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 134 343 IPR044848 GO:0003700
Rops6g01728 377 Pfam MYB-CC type transfactor, LHEQLE motif 252 296 IPR025756 -
Rops6g01728 377 Gene3D - 164 223 - -
Rops6g01728 377 MobiDBLite consensus disorder prediction 316 377 - -
Rops6g01728 377 Coils Coil 253 273 - -
Rops6g01728 377 Pfam Myb-like DNA-binding domain 167 218 IPR001005 -
Rops6g01728 377 MobiDBLite consensus disorder prediction 324 344 - -
Rops6g01728 377 MobiDBLite consensus disorder prediction 345 367 - -
Rops6g01728 377 FunFam Myb family transcription factor 164 222 - -
Rops6g01728 377 SUPERFAMILY Homeodomain-like 163 219 IPR009057 -
Rops6g01728 377 NCBIfam myb-like DNA-binding domain, SHAQKYF class 165 219 IPR006447 GO:0003677
Rops6g01728 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 222 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01728 Rops-Chr6 34837982 34842223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01728 34 300 G2-like Transcription Factor Family AT3G04450 50.526 5.10e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops6g01728 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01728 - - psat:127093006 464.536