Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01726 ATGGTGAGAACTCCATGTTGTGAGAAGATGGGTTTGAAGAAGGGACCTTGGACACCAGAAGAAGATCAGATATTGATTTCTCATATCCAACGATATGGCCATGAAAACTGGAGGGCCCTTCCAAAGCAAGCTGGTTTGTTAAGGTGTGGTAAAAGTTGTAGGCTTCGTTGGATAAATTACTTGAGGCCAGATATTAAACGAGGGAAATTCAGCAATGAAGAAATAGAGACCATCCTCAACTTGCATGGTATGCTTGGAAATAGATGGTCTGCTATTGCAGCAAGATTACCAGGACGAACGGACAACGAAATAAAGAATTTTTGGCACACCCATTTGAAGAGGCGTGAGAGAGGAAAAGTGCACAGTATCAGTACCTCCTCATCTTATCCCTTGCAAGAGGCACAAGCAACTTCTAGTTCAGGGGCTTTAATAAATATGCCACGAGTAGCGGTGGATGTATCAGGTGCTAATTCTAGTGTCACTGAGAAAGTATTGATTGCCAATGATAGGAAAAACCCACCTAATAATAATATAGGTCTAGGATTTTATGGTACAGTCTCTTCTGATATTTCAGGAGAAACATTGGGAAGTAATGCTCACAGTGAGATGGGAGAAGAAATGGAATTTTGGTATAATGTCTTCATCAGCAGTCATCATAAGGGCATGGAAATATAA 675 0.4089 MVRTPCCEKMGLKKGPWTPEEDQILISHIQRYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSNEEIETILNLHGMLGNRWSAIAARLPGRTDNEIKNFWHTHLKRRERGKVHSISTSSSYPLQEAQATSSSGALINMPRVAVDVSGANSSVTEKVLIANDRKNPPNNNIGLGFYGTVSSDISGETLGSNAHSEMGEEMEFWYNVFISSHHKGMEI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01726 224 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 154 - -
Rops6g01726 224 CDD SANT 69 112 IPR001005 -
Rops6g01726 224 Gene3D - 69 115 - -
Rops6g01726 224 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Rops6g01726 224 CDD SANT 16 61 IPR001005 -
Rops6g01726 224 Gene3D - 13 66 - -
Rops6g01726 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops6g01726 224 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops6g01726 224 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops6g01726 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops6g01726 224 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops6g01726 224 FunFam MYB-related transcription factor 13 66 - -
Rops6g01726 224 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops6g01726 224 SMART sant 13 63 IPR001005 -
Rops6g01726 224 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01726 Rops-Chr6 34795509 34796730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01726 1 115 MYB Transcription Factor Family AT2G31180 80.870 1.46e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g01726 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01726 K09422 - gmx:100797027 303.523