Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01725 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATTCTGAAAGCTGCTGTTATGAAATATGGCAAAAATCAGTGGGCTCGAATCTCTTCACTCCTTGTTCGCAAATCCGCTAAGCAATGTAAGGCTCGCTGGTACGAGTGGCTTGATCCTTCCATTAAGAAGACTGAGTGGACGAGAGAAGAGGATGAGAAACTACTTCATCTTGCTAAGCTTATGCCCACGCAGTGGAGAACAATTGCTCCTATTGTAGGCCGTACCCCTTCCCAGTGCCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTGTGAAGGATGAGAACTATGAACCTGGTGATGATCCTCGGAAATTGCGACCTGGGGAGATCGATCCAAACCCAGAGTCAAAACCTGCACGTCCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGCAAGAAAGCAAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCGTCCTTACAAAAAAAGAGAGAGCTGAAGGCTGCTGGGATTGATATCAGGCGGAAGAGAAAAAGGAAAGGGATAGACTACAATGCAGAAATTCCATTTGAGAAAAGGCCTCCTCCAGGGTTTTTTGATGTTGCTGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAGGGAAAAAGGAGGGTTGATATTGAGGCACGGATGAGAAAGCAGGACAGTGCGAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTTCTATACTGCATGCCAACAAGCTGAACGACCCAGAAGCAGTAAGAAAGAGGTCAAAACTGATGCTTCCACCACCCCAGATTTCCGATCAGGAATTAGATGAAATTGCAAAGTTGGGTTATGCCAGTGACCTTGCAGGGAGTGAGGAACTTGCAGAAGGTAGTGGTGCAACGCGTGCTCTTTTGGCTAATTATGCACAAACACCTGGCCAGGGAATGACTCCTTTACGAACCCCCCAGAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCCGAAAATCTGGCTAGGTTGAGGGAGTCTCAGACACCATTGTTAGGAGGAGAGAACCCCGAGCTTTATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCAATGCTGACTCCCTCTGCGACTCCTGGCAAAGCGGGTCTCACTCCCAGAACTGGCATGACACCAGCAAGAAATGGTTATTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGAGCTCCACATTAATGAGGACATGAATATGCCTGACAGCGCTAAACTTGAGCTACAGAGACAAGCTGATGTGAGAAGAAATTTGCGCACTGGTTTAGGAGGCCTTCCACAGCCGAAAAACGAGTATCAGATAGCGATGCAACCAGTTCCAGAAGAAGCTGAAGAGCTCGAGGAGAAGATTGAAGAGGATATGTCTGATAGACTAGCTAGAGAAAAGGCAGAAGAAGAGGCAAAACAGCAGGCATTACTTAGAAAACGATCGAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTGCAGCATCATTGGAGCTTATAAGAAATTCCTTGCTAAGAGCTGATGGTGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCCGATGAGATTATTAGAAGGGAGCTTCTAACTTTGCTGGAGCATGATAATGCTAAGTATCCACTTGATGAAAAAGTAAAGAAGGAGAAAAAGAAACGAGCCAAGCATGCTGTAAATGGGTCGGCTGTTCCTGTGATAGATGACTTTGAAGAAGAAGAGATGAAAGATGCTGATAAGTTGATAAAGGAAGAGACCTGGTATCTTTGTGTAGCGATGGGGCATGAAAGTGAACCTCTTGATGAATTTATTGAAGCACATAGAACTTGCCTTAATGATCTTATGTACTTTCCCACTCGTAATGCCTATGGTCTCTCAAGTGTCGCTGGAAACATGGAAAAGCTAGCATCTTTGCAGAATGAATTTGAGAATGTGAGAAACAAGTTGGATGATGGTAAGGAAAAGATAGTACGGCTTGAGAAGAAGGTGATGGTTTTAACACAGGGCTACGAGATGAGAGCAAAAAAAAGCCTTTGGCTGCAAATTGAAGCCACTTTCAAACAGATGGACATGGCTGCAACAGAATTAGAATGCTTTGAAACTTTGCAAAAGCAGGAACAATTAGCAGCATCACACAGGATAAACAATCTATGGACTGAAGTACAGAAGCAAAAGCAACTTGAGAAAACTTTACAAAATAGGTATGGGAGTCTAATAGAAGAGCTGGAAAAGATACAAAATATCATGGACCAATACAGGGCACAAGCACAACAGCAAGAAGAAATTGAAGCAAACAGTCATGCTCACGAGTCAACTGAGACCACAGCTGATGAAACTGATGTACAGGGCACAGAGAATTGTAAACCTGCGCCTCACCCGGTAGAGCATGGAAGCGCTATAGCAGATGATCCATCTCATGATGGAACTGCTGGCCCGCAAGTAGACATTGTGCAAGATCAGGCTACTTCTAGCCCCAAATCTGACATGGATTTGGATTCTGATAAATTGCAAATAACTCACAACACTGATGACATTGGGAAAGTGGAAGGCACCAATACTGACGGTCATATTAATAATGGAGAGACGACCACACTAGGCATGGGTGCTGCAGTGGAAATAAGTACTTTTGAGGGAAGCAAGGATCAAGATGTAATTTTGGAAGCTGTAAACTCACATGATAACAGCATGCAAGAAACAACTGCTTCTAATGTGGGTGATAAGATGCAAGTTGCTGTTGGCAAAGGAGAGGTGATAAATTAG 2919 0.4443 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRRKRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDIEARMRKQDSAKNKIAQRQDAPSSILHANKLNDPEAVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSEELAEGSGATRALLANYAQTPGQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELYPSDFSGVTPKKKEIQTPNPMLTPSATPGKAGLTPRTGMTPARNGYSFSMTPKGTPLRDELHINEDMNMPDSAKLELQRQADVRRNLRTGLGGLPQPKNEYQIAMQPVPEEAEELEEKIEEDMSDRLAREKAEEEAKQQALLRKRSKVLQRELPRPPAASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRRELLTLLEHDNAKYPLDEKVKKEKKKRAKHAVNGSAVPVIDDFEEEEMKDADKLIKEETWYLCVAMGHESEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLASLQNEFENVRNKLDDGKEKIVRLEKKVMVLTQGYEMRAKKSLWLQIEATFKQMDMAATELECFETLQKQEQLAASHRINNLWTEVQKQKQLEKTLQNRYGSLIEELEKIQNIMDQYRAQAQQQEEIEANSHAHESTETTADETDVQGTENCKPAPHPVEHGSAIADDPSHDGTAGPQVDIVQDQATSSPKSDMDLDSDKLQITHNTDDIGKVEGTNTDGHINNGETTTLGMGAAVEISTFEGSKDQDVILEAVNSHDNSMQETTASNVGDKMQVAVGKGEVIN* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01725 972 Gene3D - 60 114 - -
Rops6g01725 972 MobiDBLite consensus disorder prediction 374 446 - -
Rops6g01725 972 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Rops6g01725 972 FunFam CDC5 cell division cycle 5-like 60 120 - -
Rops6g01725 972 Coils Coil 788 818 - -
Rops6g01725 972 Gene3D - 5 59 - -
Rops6g01725 972 Coils Coil 167 187 - -
Rops6g01725 972 SMART sant 58 105 IPR001005 -
Rops6g01725 972 SMART sant 6 55 IPR001005 -
Rops6g01725 972 Coils Coil 681 715 - -
Rops6g01725 972 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Rops6g01725 972 MobiDBLite consensus disorder prediction 212 238 - -
Rops6g01725 972 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Rops6g01725 972 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Rops6g01725 972 Coils Coil 512 532 - -
Rops6g01725 972 MobiDBLite consensus disorder prediction 398 412 - -
Rops6g01725 972 MobiDBLite consensus disorder prediction 113 150 - -
Rops6g01725 972 Pfam pre-mRNA splicing factor component 405 653 IPR021786 -
Rops6g01725 972 CDD SANT_CDC5_II 55 106 IPR047240 -
Rops6g01725 972 FunFam CDC5 cell division cycle 5-like 5 59 - -
Rops6g01725 972 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 802 IPR047242 GO:0000398|GO:0000974
Rops6g01725 972 MobiDBLite consensus disorder prediction 897 916 - -
Rops6g01725 972 MobiDBLite consensus disorder prediction 256 284 - -
Rops6g01725 972 Pfam Myb-like DNA-binding domain 10 70 - -
Rops6g01725 972 MobiDBLite consensus disorder prediction 809 866 - -
Rops6g01725 972 MobiDBLite consensus disorder prediction 221 238 - -
Rops6g01725 972 CDD SANT 10 53 IPR001005 -
Rops6g01725 972 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Rops6g01725 972 MobiDBLite consensus disorder prediction 340 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01725 Rops-Chr6 34784870 34790667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01725 1 834 MYB-Related Transcription Factor Family AT1G09770 76.162 0.0 1238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g01725 Myb_Cef 6.3e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01725 K12860 - gmx:100790369 1540.78