Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01721 ATGGAGACGCCTTCTTCCTCCGCATCGCAATTCGCTTATTCCAACACCGGCTACTTTCCTGTTCCCTTTCACCTTCAGCAACCGGCAACCACTCACTACGCTGCAGCACCGTACGTCGTCGCCGCGCCTGTGCAAATCCCCGTGCCTCCTGTCGTCGGTCCCGTTCTGCCGCCGACGGTGGCCGGCGCGTACTCCGTGCCGCAATATCAGGCACATCAATTATTCGAGAGGGACGCACAGATAATTACACGTGAGGCTCTTGAGAGTGTTAAGGCAGCGATCGCGAGCAGTGACGTGGAGCACAAAGCTGAGACAAAAAAGAAAGCTGTTCCTCGCAAAGCTGCTGGTCAAACTTGGGAGGATCCTATTCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTTTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGATAAGCGGACTGGAAAGACAAAGGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCGATAAAACTACGCAAGAGTAAGTGGAAGGAGAGGACGGATTATGAGGCACTGGAAAAACAGAAGAATCAAATTCAGAAGAAACCCAAACTGCCAAGGAAGGGTGTTCTGCACAAGTGA 723 0.491 METPSSSASQFAYSNTGYFPVPFHLQQPATTHYAAAPYVVAAPVQIPVPPVVGPVLPPTVAGAYSVPQYQAHQLFERDAQIITREALESVKAAIASSDVEHKAETKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQIQKKPKLPRKGVLHK* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01721 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Rops6g01721 240 SMART rrm1_1 133 206 IPR000504 GO:0003723
Rops6g01721 240 SUPERFAMILY RNA-binding domain, RBD 116 212 IPR035979 GO:0003676
Rops6g01721 240 FunFam RNA-binding protein 42 67 217 - -
Rops6g01721 240 CDD RRM_RBM42 126 208 IPR034215 -
Rops6g01721 240 MobiDBLite consensus disorder prediction 220 240 - -
Rops6g01721 240 Gene3D - 70 206 IPR012677 -
Rops6g01721 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Rops6g01721 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01721 Rops-Chr6 34722264 34728888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01721 134 232 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 1.38e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01721 K25079 - gmx:100807693 372.089