Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01715 ATGTGTGAAGCCCTGAAAGCGCAGTACCAGGTATCCGAGGAAATCGGTCGTGGCCGTTTTGGAACAATTTTCCGTTGCTTCAACCCGATTTCTAACGAACCCTACGCCTGCAAAGTCATCGACAAATCCCTCCTCGCCGATAAAACCGACCGTGAGTGTCTCGAAAATGAACCCAAATTCATGTCCCTCCTCTCTCCACACCCTAACATCCTTCAAATCTTCGATGTTTTCGAAAACGACGACGTTTTATCCATCGTAATGGAGCTTTGTCAACCTCTCACCCTCCTTGACCGTTTAGTCTCAAACCCTTTGTCTGAACCCCAAGCCGCTTCCCTCATGAAGCAGCTTCTAGAAGCCGTGGCTCACTGCCACCGGTTAGGTGTGGCCCACCGTGACATAAAGCCAGACAACATTCTCTTCGATTCCGCCGACAACCTTAAACTCGCCGACTTTGGGTCCGCGGAGTGGTTCGGCGACGAGAGGGGCATGAACGGCGTGGTGGGGACGCCGTATTACGTGGCACCGGAGATTCTGATGGGGAAGGAGTACGATGAGAAGGTTGATGTTTGGAGTTGTGGTGTGATTTTGTATATAATGTTGGCTGGGATTCCACCCTTTTATGGTGAATCAGCTTCTGAGATCTTTGAAGCTGTTATTAGGGGTAATCTAAGGTTCCCTTCTAGAATCTTCGGCTCTGTGTCACCTTCTGTTAAAGATCTCTTGAGAAAAATGATTTGCAGGGATCCTTCTAAAAGATTCTCAGCTGAACAAGCCTTGAGAAACCCATGGTTCTTGATGGCAGAGTAA 807 0.487 MCEALKAQYQVSEEIGRGRFGTIFRCFNPISNEPYACKVIDKSLLADKTDRECLENEPKFMSLLSPHPNILQIFDVFENDDVLSIVMELCQPLTLLDRLVSNPLSEPQAASLMKQLLEAVAHCHRLGVAHRDIKPDNILFDSADNLKLADFGSAEWFGDERGMNGVVGTPYYVAPEILMGKEYDEKVDVWSCGVILYIMLAGIPPFYGESASEIFEAVIRGNLRFPSRIFGSVSPSVKDLLRKMICRDPSKRFSAEQALRNPWFLMAE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01715 268 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01715 268 CDD STKc_CAMK 8 263 - -
Rops6g01715 268 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 268 - -
Rops6g01715 268 SUPERFAMILY Protein kinase-like (PK-like) 7 265 IPR011009 -
Rops6g01715 268 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Rops6g01715 268 PIRSF ILK 3 260 - -
Rops6g01715 268 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01715 268 Gene3D Transferase(Phosphotransferase) domain 1 2 268 - -
Rops6g01715 268 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops6g01715 268 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 264 - -
Rops6g01715 268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Rops6g01715 268 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01715 Rops-Chr6 34696871 34698061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01715 2 263 EF-hand Containing Proteins AT2G38910 43.233 3.86e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops6g01715 Pkinase 7.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01715 - K08794 gmx:548089 466.077