LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g01709	ATGCGTCCTCGTCACTTCATTGAGAGTGTTAGCATCGGAGTCGGAAGAAGGAAATTTCATAGTAGCGGGGTGATCAACATGTCAAAAAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGGCGAAAGCCGGGCGAGTGGTAATGGAACTGTTTGCAGATGTCACTCCTAAAACAGCTGAAAACTTCCGAGCCCTTTGCACCGGTGAAAAGGGCATTGGAAAATCTGGGAAGCCTTTGCATTACAAAGGTTCCGGATTCCATCGCATTATTCCAGAGTTTATGTGTCAGGGAGGAGATTTTACCCGAGGCAATGGGACAGGAGGAGAGTCAATTTATGGTGCTAAATTTTCAGATGAGAATTTCAAGCTCAAGCATACAGGGCCTGGTATTCTTTCCATGGCGAATGCTGGACCTAATACCAATGGTTCTCAGTTCTTTATATGCACTACCAGGACACCATGGCTTGATGGAAAACATGTTGTGTTTGGAAAAGTTGTGGATGGCTACAGTGTAGTGAAGGAGATGGAGAAGGTTGGTTCAGGGAGTGGAACGACATCAGAAACAGTTGTCATCGAAGATTCTGGGCAGATAACAGAGAATTGA	606	0.4406	MRPRHFIESVSIGVGRRKFHSSGVINMSKNPKVFFDILIGKAKAGRVVMELFADVTPKTAENFRALCTGEKGIGKSGKPLHYKGSGFHRIIPEFMCQGGDFTRGNGTGGESIYGAKFSDENFKLKHTGPGILSMANAGPNTNGSQFFICTTRTPWLDGKHVVFGKVVDGYSVVKEMEKVGSGSGTTSETVVIEDSGQITEN*	202

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g01709	201	PIRSF	Peptidylpro_ismrse	19	201	IPR024936	GO:0003755
	Rops6g01709	201	FunFam	Peptidyl-prolyl cis-trans isomerase	27	199	-	-
	Rops6g01709	201	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	41	194	IPR002130	GO:0000413\|GO:0003755
	Rops6g01709	201	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	32	198	-	-
	Rops6g01709	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	87	99	IPR002130	GO:0000413\|GO:0003755
	Rops6g01709	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	130	145	IPR002130	GO:0000413\|GO:0003755
	Rops6g01709	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	51	66	IPR002130	GO:0000413\|GO:0003755
	Rops6g01709	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	145	157	IPR002130	GO:0000413\|GO:0003755
	Rops6g01709	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	158	173	IPR002130	GO:0000413\|GO:0003755
	Rops6g01709	201	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	34	197	IPR002130	GO:0000413\|GO:0003755
	Rops6g01709	201	Gene3D	-	19	201	IPR029000	-
	Rops6g01709	201	SUPERFAMILY	Cyclophilin-like	25	198	IPR029000	-
	Rops6g01709	201	CDD	cyclophilin_ABH_like	31	196	-	-
	Rops6g01709	201	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	82	99	IPR020892	GO:0003755\|GO:0006457

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g01709	Rops-Chr6	34622771	34626062	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g01709	4	179	U-box Gene Family	AT5G67530	43.646	2.16e-32	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g01709	K01802		-	cave:132170497	325.479