Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01707 ATGGCGAACCGGTGGTGGACCGGCTCTGTGGGTGTTGTTGACGACTCTTCCCCCATGAAAAAATCCGATCTGGGTTTTTCCATGAATGACAGCGCCGTTACGGGGAACAGCAGCGGTGGAGTTGGCGACGACGAAGAGGAGAAAGAAAACAGTGATGAACCTAAAGAAGGAGCTATTGATGTGGCCACCACGCGCCGCCCTAGGGGCCGTCCAGCGGGGTCGAAGAACAAACCAAAGCCACCGATATTCGTGACGAGGGACAGCCCTAACGCACTTCGAAGCCACGTCATGGAGGTAGCAAGTGGAGCTGACATCGTCGATTGCGTTGTTCAGTTCGCCAGAAAGCGTCAAAGAGGTGTTTGCATTCTCAGCGGCAACGGCACCGTCGTCAACGTCTCTCTTCGGCAGCCCGCGGCGGCGGCCGCAGTCATGGCACTTCATGGAAGGTTTGATATACTGTCGTTGACCGGTTCGATCCTGCCGGGACCGTCACCGCCAGGGGCTACTGGTCTGACTATTTACCTTGCCGGAGGTCAGGGACAGGTAGTCGGCGGCGGGGTGGTGGGTCCGCTGGTGGCTGCGGGACCGGTTATGATCATGGCAGCTACGTTTTCAAATGCAGCTTATGAGAGGTTGCCGATGGAGGAGGGTGATGGGGAAGGTCAGGGACAAGGTGGTGGTTGCTCTCCGCCGGCGATGGGAGGGTCCATCGGAGAAGCCCCGTCGTCGGTTCCTGTGTATAATAATTTGGCTCTTCCAAATGGGCAACAACTGAACCATGAAGCTTATTCTCCTTGGACTCATGGTCATGCCAGAACACCCTACTAA 828 0.5664 MANRWWTGSVGVVDDSSPMKKSDLGFSMNDSAVTGNSSGGVGDDEEEKENSDEPKEGAIDVATTRRPRGRPAGSKNKPKPPIFVTRDSPNALRSHVMEVASGADIVDCVVQFARKRQRGVCILSGNGTVVNVSLRQPAAAAAVMALHGRFDILSLTGSILPGPSPPGATGLTIYLAGGQGQVVGGGVVGPLVAAGPVMIMAATFSNAAYERLPMEEGDGEGQGQGGGCSPPAMGGSIGEAPSSVPVYNNLALPNGQQLNHEAYSPWTHGHARTPY* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01707 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 216 - -
Rops6g01707 275 MobiDBLite consensus disorder prediction 214 235 - -
Rops6g01707 275 CDD DUF296 93 176 IPR005175 -
Rops6g01707 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 229 IPR014476 GO:0003680
Rops6g01707 275 FunFam AT-hook motif nuclear-localized protein 92 220 - -
Rops6g01707 275 MobiDBLite consensus disorder prediction 22 38 - -
Rops6g01707 275 Gene3D - 92 220 - -
Rops6g01707 275 ProSiteProfiles PPC domain profile profile. 89 226 IPR005175 -
Rops6g01707 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 206 IPR005175 -
Rops6g01707 275 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01707 Rops-Chr6 34607393 34608642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01707 1 275 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 55.219 2.08e-86 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01707 - - aprc:113873404 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01707 6 34607393 34608642 Rops6g01707 6 34607393 34608642 ECH