Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01702 ATGTGGAAGCTACGTCGCGCGCTGGCTATGGCTTCCAGTTCAGGGCATCAGTTTTTGGGAACACTGTCACTGGCATCCAGGAATTTTGGTTCTACCCATTTGGCTGGCTCTTCTACTGCTACAAACAATTATGCTGCAAAAGGTCAAATATTTGCTCCTTATGCTATTTACAAGGGCAAAGCTGCACTTTCTTTGACTCCTCGTCTTCCAACTTTCACCAAGGTCGATTCTGGGGCTGTTGTAGTTGATCGTCGAGGTTCCATAATGATGGTTTTCACACCTGCTGTTGGGGAGCGCAAATATGACTGGGACAAGAGACAAAGATTTGCTCTCTCGGCCACAGAAGTTGGTTCTTTGATAACCATGGGTCCTCAAGATTCCTGTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAAATAAGGAAGAGCTTATCAATTAAGCCTCATGCGAACAGCAATGGCTACTTCGTGTCTTTGACTGTTGTCAACAACGTTTTACAATCCAAAGAATACTTTACTGTTCCTGTCACAACTGCTGAATTTGCTGTGATAAAGACAGCTTGCAGTTTTGCCTTGCCACACATCATGGGTTGGGATCGCTTGACTCAGCGGCCACAATCCCGAGGCACAATTGCGCTTCAATCGAAGTTAGACTCACGAGATTTAGACTTGGAGTGGGAAAAGTGA 699 0.4492 MWKLRRALAMASSSGHQFLGTLSLASRNFGSTHLAGSSTATNNYAAKGQIFAPYAIYKGKAALSLTPRLPTFTKVDSGAVVVDRRGSIMMVFTPAVGERKYDWDKRQRFALSATEVGSLITMGPQDSCEFFHDPSMLSSNAGQIRKSLSIKPHANSNGYFVSLTVVNNVLQSKEYFTVPVTTAEFAVIKTACSFALPHIMGWDRLTQRPQSRGTIALQSKLDSRDLDLEWEK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01702 232 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 34 232 IPR013742 GO:0003697|GO:0006355|GO:0006952
Rops6g01702 232 Gene3D Transcriptional Coactivator Pc4; Chain A 41 212 IPR009044 GO:0003677|GO:0006355
Rops6g01702 232 SUPERFAMILY ssDNA-binding transcriptional regulator domain 48 231 IPR009044 GO:0003677|GO:0006355
Rops6g01702 232 Pfam Whirly transcription factor 56 190 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01702 Rops-Chr6 34562464 34565446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01702 48 232 Whirly Transcription Factor Family AT1G71260 64.737 3.15e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Rops6g01702 Whirly 8.4e-55 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01702 K26561 - gmx:100817863 323.553