Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01679 ATGGCCACGGAGGAGCAGACATTAATGTTGAAGGACAAGTTGCGGGAACTGATCAAGACTATAGTGGATGAGGATGATTACACGGTGCATGCTGCTGAAGAGGCTTTGATTGCTCTTTCTGCTCTCAAGGATTTAAAATACAGTGTCTCTCTTTCACGTAAACTAGAGCATTTACCTGTTCCTGCTCAGTTTCGATGCCCCATCTCAGGGCACTTGATGATAGACCCTGTCATCTTATCCACTGGACAGATTGAGTTAGTTATAACGAGGTTCTATTGTCTAAAGACCTATGATAGGGCATACATCCAGAGGTGGCTGGATGAAGTGCACAGGATTTGCCCTCAGACTAAGCAAGTCCTCTCTCATTCCATCCTTACACCTAATTGCTTGGTCCATGACATGATTTTAAGGTGGTGTAAAGAGCACGGAATTGAGCTACCAAAGCCTGTTGGGGACATTCATGAAAGAGAAGTAACTGATGCACTCAGACACAGTTTACATTCATTGCTTTATAACTTGTCATTGTCTGTTTCTGATCAAAAAGAAGCTGCGAAAGAACTTCGGCAGTTAGCAAAGAAAATGCCCTCATTTCGAACACTTTTTGGAGAGCCTGAAGTGATTCAACAATTGCTCAGTCCATTGTCAGCTGACATGGCTTGTATTGATCCCCAGCTCCACGAGGACTTGATCACAACTGTCCTAAATCTCTCAATTAATGATGACAACAAGAAAGTGTTTGCAGAGGATGAAAAGACCATCTCCTTGCTTGTTGATTCCTTGAAATCAGGTACCATTCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCTCAATATCAGCTCTTGATCCCAACAAACACATCATTGGAAAATCTGGAGCTATCAAATATTTGGTTGACCTTTTAGAAGAGGGACATCCTTCAGCCATGAAAGATGCTGCTTCAGCCATATTCAACCTATGTATTGCGCATGAAAATAAAGGAAGGACTGTCCGAGAAGGGGCAATTCAGGTTATTCTTAACAAGATCATGGACCGTATTCTAGTTGATGAGTTGTTGGCTCTACTGGCACTCCTCTCTAGCCATTCCAATGCTATAGAAGCATTGGGAAATCATAGTGCTGTCCCCTTTTTGCTGGATGTTTTAAGGGAAGTCACATCAGAACGCAGCAAGGAAAACTGTGTTGCAATCTTATATACAATGTTTTTCAACAATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAAAAGCCCATGGAACGATATCTAAGCTTGCACAATGTGGAACTTCAAGGGCCAAGAGGAAAGCTAGCGCTATTCTTGACAGGCTCCACAAGCCTTCTTCCTCAACACAAACCACTCAAGGTTCTGTTTAG 1374 0.4221 MATEEQTLMLKDKLRELIKTIVDEDDYTVHAAEEALIALSALKDLKYSVSLSRKLEHLPVPAQFRCPISGHLMIDPVILSTGQIELVITRFYCLKTYDRAYIQRWLDEVHRICPQTKQVLSHSILTPNCLVHDMILRWCKEHGIELPKPVGDIHEREVTDALRHSLHSLLYNLSLSVSDQKEAAKELRQLAKKMPSFRTLFGEPEVIQQLLSPLSADMACIDPQLHEDLITTVLNLSINDDNKKVFAEDEKTISLLVDSLKSGTIQTRSNAAAAIFSISALDPNKHIIGKSGAIKYLVDLLEEGHPSAMKDAASAIFNLCIAHENKGRTVREGAIQVILNKIMDRILVDELLALLALLSSHSNAIEALGNHSAVPFLLDVLREVTSERSKENCVAILYTMFFNNKTKRKEIRDDEKAHGTISKLAQCGTSRAKRKASAILDRLHKPSSSTQTTQGSV* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01679 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 145 IPR013083 -
Rops6g01679 457 SUPERFAMILY RING/U-box 55 149 - -
Rops6g01679 457 SMART arm_5 281 321 IPR000225 GO:0005515
Rops6g01679 457 SMART arm_5 361 402 IPR000225 GO:0005515
Rops6g01679 457 SMART arm_5 239 280 IPR000225 GO:0005515
Rops6g01679 457 SUPERFAMILY ARM repeat 148 443 IPR016024 -
Rops6g01679 457 SMART Ubox_2 63 138 IPR003613 GO:0004842|GO:0016567
Rops6g01679 457 CDD RING-Ubox_PUB 61 125 IPR045210 -
Rops6g01679 457 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Rops6g01679 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Rops6g01679 457 PANTHER U BOX DOMAIN-CONTAINING 16 444 - -
Rops6g01679 457 ProSiteProfiles U-box domain profile. 59 145 IPR003613 GO:0004842|GO:0016567
Rops6g01679 457 Pfam U-box domain 60 142 IPR003613 GO:0004842|GO:0016567
Rops6g01679 457 Gene3D - 159 453 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01679 Rops-Chr6 34175877 34177708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01679 134 452 U-box Gene Family AT3G07360 51.988 9.01e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01679 - - gmx:100806132 550.436