Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01677 ATGAATTGCTTCCCGTGTTGTGCCTCCCAGAAAAGTAAGAAAAGCTTCAGCAAGAGGGAACATGGTTCCACAACACCACAGGAAACTATTCCAGCAAAAACACCAGATATGAAGAAACAAAAGCCAGATGAGGAAAATCAAGTTGACACAGAAAATGTTAAAACAAAAAATTTCACTTTCCGTGAGCTAGCAACTGCAACAAAGAATTTCAAACAGGAATGCCTGCTTAGTGAAGGAGGCTTTGGCAGAGTGTACAGAGGGATAATTCCTACAACCGGACAGGTAGTGGCCGTGAAGCAACTCGACCGACATGGGACACAATGTAATGACTTTGTGGCTGAGGTTGCGACGCTAAGTCTCTTGCACCATGAAAATTTGGTCAATCTCATTGGTTATTGTGCTGATGGCGATCAACGACTTTTGGTATATGAATTCATTCATGGGTGCACTCTAGAAGACCGTCTTCTTGAAAATAAAGCGGATGAACCTCCATTAGATTGGTTCAACAGAATGAAAATAGCAGCTGGTGCTTCTCAAGGACTACAGTACTTGCATGAGAGTGCCAATCCCCCAGTTATATACCGGGACCTGAAAGCGTCCAACATCTTTCTGGATAATGATCTTAATGCAAGACTACTGGATTTTGGAATGGCCAAGCTTACTGGTGGAGACAAGATGAACCATGCACCTCCAAGAGTTATGGGTACCTATGGTTACTGTGCTCCAGAGTATGTAAGAGGAGGTCAACTCACCTTGAAATCAGACGTATACAGTTTCGGAGTTATCTTGCTAGAGCTCATAACTGGACGACGAGCCATTGACACCACAAGACCAAACGAAGAGCAAAACCTAGTTTCATGGGCACAACCCTTATTTAGGGACCCAAAAAGATATCCAGATATGGCAGATCCTCATCTTAATAAACATTTCCCAGAAAAGGATCTCAATCAAGCTGTTGCAATAGCAGCCATGTGTTTACAGGAGGAATCAGAAGCCCGTCCTTTGATCAGCGACGTTGTAACTGCTCTTAGTTTTCTTTCCACGGTTCCTACAGAGGTTATTCGACCCTCTCTTCCCCCTGCCACCTCGGTCTCTAAGGCGAGAGGTGCAAGTGGAAGTGAAACAGAAGCTGATAAGGAAAGCCAGCCTCGACAAGTGTTTTCCTCCAAATCAAGCCGCAAAAGCAGCTCAAGATCAAGGAATGGAACACTTGGCTCAGATTCAGGAGATGGAAGCATTTCTTCCAGCAGCAAAAGCAGTAGGAAATCACATGGTAATTTAAGCCAGAAGAGCAGCAAAAAATCTTCAACCGAAGATTCAAGAAAGAAGAGCAGCAAAAAATCTTCAACCAAAGATTTAAGCCAGAAGAGCAGCAGAAAATCTTCTAGCCATAAGAGCAGTGGGAAATCTTCTGCCAGAATTTTAAGCCACAAGAGTAGCATGGTGTCAGATGATGGAAGCATTTCATGTGGGAGTAGCAGGGCTTCCTTAAGCCAATATAGCAGCAGTGTGGCGTCAGAGGATGAAGATGTTCACTCAGACCTCAACAGCAGCAGAAGGACAGACGAAGAGAGCATACGTTTAAGCCAAGCAAGCAGCATGGGATCAGATGAGGGAAGTGTTTATTCACGATGA 1635 0.4422 MNCFPCCASQKSKKSFSKREHGSTTPQETIPAKTPDMKKQKPDEENQVDTENVKTKNFTFRELATATKNFKQECLLSEGGFGRVYRGIIPTTGQVVAVKQLDRHGTQCNDFVAEVATLSLLHHENLVNLIGYCADGDQRLLVYEFIHGCTLEDRLLENKADEPPLDWFNRMKIAAGASQGLQYLHESANPPVIYRDLKASNIFLDNDLNARLLDFGMAKLTGGDKMNHAPPRVMGTYGYCAPEYVRGGQLTLKSDVYSFGVILLELITGRRAIDTTRPNEEQNLVSWAQPLFRDPKRYPDMADPHLNKHFPEKDLNQAVAIAAMCLQEESEARPLISDVVTALSFLSTVPTEVIRPSLPPATSVSKARGASGSETEADKESQPRQVFSSKSSRKSSSRSRNGTLGSDSGDGSISSSSKSSRKSHGNLSQKSSKKSSTEDSRKKSSKKSSTKDLSQKSSRKSSSHKSSGKSSARILSHKSSMVSDDGSISCGSSRASLSQYSSSVASEDEDVHSDLNSSRRTDEESIRLSQASSMGSDEGSVYSR* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01677 544 MobiDBLite consensus disorder prediction 507 526 - -
Rops6g01677 544 MobiDBLite consensus disorder prediction 460 506 - -
Rops6g01677 544 PANTHER OS07G0668900 PROTEIN 3 351 - -
Rops6g01677 544 Pfam Protein kinase domain 75 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01677 544 FunFam Serine/threonine-protein kinase PBS1 146 357 - -
Rops6g01677 544 FunFam probable serine/threonine-protein kinase RLCKVII 42 145 - -
Rops6g01677 544 MobiDBLite consensus disorder prediction 355 544 - -
Rops6g01677 544 SUPERFAMILY Protein kinase-like (PK-like) 52 346 IPR011009 -
Rops6g01677 544 MobiDBLite consensus disorder prediction 384 433 - -
Rops6g01677 544 Gene3D Phosphorylase Kinase; domain 1 32 145 - -
Rops6g01677 544 MobiDBLite consensus disorder prediction 34 51 - -
Rops6g01677 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Rops6g01677 544 MobiDBLite consensus disorder prediction 434 459 - -
Rops6g01677 544 CDD STKc_IRAK 76 343 - -
Rops6g01677 544 MobiDBLite consensus disorder prediction 527 544 - -
Rops6g01677 544 ProSiteProfiles Protein kinase domain profile. 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01677 544 Gene3D Transferase(Phosphotransferase) domain 1 148 349 - -
Rops6g01677 544 MobiDBLite consensus disorder prediction 1 52 - -
Rops6g01677 544 SMART serkin_6 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01677 Rops-Chr6 34123143 34126264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01677 1 350 Glycoside Hydrolase AT3G07070 61.773 2.14e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Rops6g01677 Pkinase 8.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01677 - - pvu:PHAVU_007G115500g 589.341