Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01670 ATGTATTTTTGGAGGAGGAGGAAAAAGCAAGAGTTGAAGACAGATTCTGAAGCAGAGGGTGAAAAATCCAAAATTTGTGAGGAATGTGGTGCTACTTTCAAAAAACATGCCTACTTGTTGCAGCACATGCAGAGTCATTCACTTGAGCTTAACTTGGAGTCGATAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGTGCCTAAGAGCCCATGTTAACTCATGCCATCAATATGAGACATGTGGCACTTGTGGGACTAAGCAACTGAAGAAGAATATTAAGAGCACACATGAATCTAGCAGTTCATCAGAGACCTTTAAATGTGAATTTAAGGGTTGTGACTGCACATTCTCAAGTAAATCTAATCTTCACAAGCATGAGAAGGCTGTGCACTTCAAAGAAAAGCTTTTTGTGTGTGGGTTTGATGGTTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAACCATGATAAAAATGGGAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCCAGGGGAGGGAAGAAGAGAAAATATCCTACTGTTGAAATGTTAGTGAGGAAGAGAGTTACCCCACCAAGTCGAACTGGTTACTTATGCAGGATAGTGAGGAAGATGTGTATTGATCCAATGCGATATTGA 690 0.4072 MYFWRRRKKQELKTDSEAEGEKSKICEECGATFKKHAYLLQHMQSHSLELNLESIDVVCLEPGCMKHFTNAQCLRAHVNSCHQYETCGTCGTKQLKKNIKSTHESSSSSETFKCEFKGCDCTFSSKSNLHKHEKAVHFKEKLFVCGFDGCGMRFAYKHVRDNHDKNGKHVFTLGDFEEADEEFRSRPRGGKKRKYPTVEMLVRKRVTPPSRTGYLCRIVRKMCIDPMRY* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01670 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Rops6g01670 229 Pfam Zinc finger, C2H2 type 26 46 IPR013087 -
Rops6g01670 229 Pfam Zinc finger, C2H2 type 112 137 IPR013087 -
Rops6g01670 229 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Rops6g01670 229 ProSitePatterns Zinc finger C2H2 type domain signature. 114 137 IPR013087 -
Rops6g01670 229 ProSitePatterns Zinc finger C2H2 type domain signature. 59 82 IPR013087 -
Rops6g01670 229 PANTHER ZINC FINGER PROTEIN 14 210 - -
Rops6g01670 229 SMART c2h2final6 143 169 IPR013087 -
Rops6g01670 229 SMART c2h2final6 57 82 IPR013087 -
Rops6g01670 229 SMART c2h2final6 112 137 IPR013087 -
Rops6g01670 229 SMART c2h2final6 24 46 IPR013087 -
Rops6g01670 229 SUPERFAMILY beta-beta-alpha zinc fingers 20 47 IPR036236 -
Rops6g01670 229 ProSitePatterns Zinc finger C2H2 type domain signature. 145 169 IPR013087 -
Rops6g01670 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 142 IPR013087 -
Rops6g01670 229 SUPERFAMILY beta-beta-alpha zinc fingers 107 150 IPR036236 -
Rops6g01670 229 Gene3D Classic Zinc Finger 4 87 - -
Rops6g01670 229 Gene3D Classic Zinc Finger 107 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01670 Rops-Chr6 33997997 33999890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01670 18 172 C2H2 Transcription Factor Family AT1G72050 52.500 1.11e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g01670 zf-C2H2 0.0081 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01670 K09191 - gmx:100801812 284.648