Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01661 ATGTTCAAGTTCCTGAAAGAGGTTGTTGGTGGATCTGGAACGGGCCTCAAGGATCTCCCTTACAACATCGGTGAACCTTACCCTTCTGCTTGGGGCTCTTGGCTTCATTTTCGCGGCACCTCCAAAGATGATGGTTCTGCGGTGTCAATATTTTCTCTATCTGGAAGCAATGCTCAGGATGGACATTTAGCTGCGGGTCGTAATGGTGTTAAGCGTCTACGCACTGTTAGGCATCCAAATATTTTGTCATTTCTCCACAGTGCTGAGATTGAAACTCACGACGGTGGTTCTCCCAAGGTCACTATTTATATTGTGACTGAGCCTGTAATGCCCCTCTCTGACAAAATTAAGGAGTTAGGTCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGCCTGCATCAAATAGCGAAAGCTGTGAGCTTCTTAAATAATGACTGTAAACTTGTTCATGGTAATGTTTGCTTGGCTAGTGTTGTTGTCACACAAACTTTGGACTGGAAACTACATGCTTTTGATGTTCTATCAGAGTTTGATGGGAGTAATGAAGCTTCCTCTGGGCAAATGCTGCAATATGCATGGCTTGTCGGATCACAATACAAATCAATGGAGCTGGCAAAATCTGACTGGGCTGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGCCTAATCTACGAGCTATTCTCTGGTATGAAGTTGGGCAAAACGGAGGAGTTACGTAACACTGCCTCCATTCCCAAGTCTCTACTTCCAGATTACCAGCGGTTACTGAGTTCCATGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTTATGGAAATTCTCAGTTTGAAAGATAGTGTTGAGAGAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTAAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTCCGTGTCAAGGTGCTTCCAACAATTGTCAAACTCTTTGCCTCCAATGACCGAGCTATTCGAGTTAGCCTTCTTCAACATATTGACCAATTTGGAGAGTCATTATCAGCACAAGTTGTTGATGAGCAGGTTTACCCTCATGTTGCTACTGGTTTCTCTGATACATCTGCTTTTCTGAGGGAACTTACTCTAAAATCCATGTTAATTCTGGCTCCAAAGCTGTCTCAAAGGACCATTTCGGGGTCATTATTAAAGCATCTGTCAAAGTTACAGGTTGATGAAGAACCAGCAATACGAACAAATACTACCATCTTATTGGGAAATATTGCAAGCCACTTGAATGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACGGTCCGTGCTTTGCGTGATACATTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGTTCCTACTATGACATCACTGAAATTGCTACTCGGATTCTTCCTAATGTTGTTGTACTCACAATTGATCCTGACAGTGAAGTTCGATCTAAGGCATTTCAAGCAGTTGATCAATTTTTGCAGATGGCGAAACAATATTATGAAAAGACAAATACAGCAGAGGCTACTGGGGGTTCGGGCATGGGGAGCTCATCGATTCCAGGAAATGCAAGTTTACTTGGATGGGCCATGAGCTCCTTGACCCTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGTGAGTTCTAGTGCACTTAATCCAACATCTTCTAATGCCAGCTCAGCTGTAGATACTCCTTCACCAGCACCTATCCGTGTAAGCTCTACAACAGATTTCTCTGAACCCCCCGTTCCTCCATCTCCTACATCAACGGATGGCTGGGGAGAACTAGAGAATGGAATCGATGAGGAGACTGACAATGACAAGGATGGGTGGGATGATCTGCAACCACTTGAAGAAACAAAGCCAGCTCCAGCTCTTGCGAACATTCAAGCAGCTCAAAGGCGGCCAGTTTCTCAACCTGTTTCACAGACAAAACAAGCCTCAATTATGCAACCCAAAAGTACATCAAAGTTGAGCAAGGATGAAGACGATGATTTGTGGGGTTCCATAGCAGCTCCTGCTCCAAAAACATCAAAACCTTTAAATTTGAAATCAGCTGCAACTGATGATGATGATCCCTGGGCTGCCATTGCTGCTCCTGCACCCACTACTAAGGCTAAGCCCTTGTCAGCTGGCAGAGGTCGGGGAGCTAAACCTGCTGCTCTGAAATTAGGCGCTCAACGGATAAACCGGACATCATCATCAGGGATGTAA 2391 0.4417 MFKFLKEVVGGSGTGLKDLPYNIGEPYPSAWGSWLHFRGTSKDDGSAVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSAEIETHDGGSPKVTIYIVTEPVMPLSDKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNEASSGQMLQYAWLVGSQYKSMELAKSDWAAIKKSPPWAIDSWGMGCLIYELFSGMKLGKTEELRNTASIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVERDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFRVKVLPTIVKLFASNDRAIRVSLLQHIDQFGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTISGSLLKHLSKLQVDEEPAIRTNTTILLGNIASHLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEIATRILPNVVVLTIDPDSEVRSKAFQAVDQFLQMAKQYYEKTNTAEATGGSGMGSSSIPGNASLLGWAMSSLTLKGKPSDHAPVASVSSSALNPTSSNASSAVDTPSPAPIRVSSTTDFSEPPVPPSPTSTDGWGELENGIDEETDNDKDGWDDLQPLEETKPAPALANIQAAQRRPVSQPVSQTKQASIMQPKSTSKLSKDEDDDLWGSIAAPAPKTSKPLNLKSAATDDDDPWAAIAAPAPTTKAKPLSAGRGRGAKPAALKLGAQRINRTSSSGM* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01661 796 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 9 774 - -
Rops6g01661 796 Gene3D - 282 561 IPR011989 -
Rops6g01661 796 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Rops6g01661 796 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01661 796 Gene3D Transferase(Phosphotransferase) domain 1 110 280 - -
Rops6g01661 796 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Rops6g01661 796 MobiDBLite consensus disorder prediction 596 796 - -
Rops6g01661 796 SMART serkin_6 37 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01661 796 MobiDBLite consensus disorder prediction 601 638 - -
Rops6g01661 796 MobiDBLite consensus disorder prediction 691 714 - -
Rops6g01661 796 SUPERFAMILY ARM repeat 293 551 IPR016024 -
Rops6g01661 796 SUPERFAMILY Protein kinase-like (PK-like) 37 287 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01661 Rops-Chr6 33798309 33810308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01661 70 291 MAP Kinase Kinase Kinase AT5G66850 26.471 2.21e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Rops6g01661 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01661 K08876 - gmx:100792884 1374.38