Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01658 ATGGAATTCGATGCCGCAATTCCCATCTCCCAAGCGGCCTTCACTCCTCCAGATTCACTGTGGATGATTAAATTGAGGTCAAGTGAGATAATGGAATCTGGACCTTATCCGCAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTCAATCATCCTCCCAACAGGAACCTGGCCATAGCCACTGCAAGGATGATAGGCGAGTACCCGGAAAGAATAGGGCAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAGAGACCAGGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGCTATCCACTCCGCCCTAATGAACCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGAAACACTTGCAAATTCCATCATCCACAACCAAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTACCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCATATACAGGAGGAATTACAAATTGGTCAAGGGCATCTTATATTCCTAGTCCACGCTGGCAAGGCCCTTCAAGTTATACACCTTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCTGGATGGAGTGCGTACAGTGGTCGAATGGGATCGATCTCTACTTCAGACAGTCCACATCAATCAATGGGAAATGGTCAAACATATGGAACTTCTGGCCAAGGGTTTTATGCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACGGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCACATGATAGGCTAATTCCTGCTCCTGACTGTGCCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAGCCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATTTTCGCCTATGATATATCTGCATCACCTTCAGCTGATGCCCCAGGCAGGCATCTGTTAGGATCTTCATCGGGAACTGCTGCACTGAATTTATCATCAGAAGGACTTGTGGAGTCAAGCTCAGCAAAACCCAGGAGGCTTTCAGTGTCAGAGACAAGACAGATTCCTTCCGGTGATGATGACATTGATGATGATGGATAA 1230 0.4569 MEFDAAIPISQAAFTPPDSLWMIKLRSSEIMESGPYPQRPGEPDCSYYIRTGLCRFGATCRFNHPPNRNLAIATARMIGEYPERIGQPECQYYLKTGTCKFGATCKFHHPRDQAGIAGRVSLNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPTTPGQQSYTGGITNWSRASYIPSPRWQGPSSYTPLILPQGVVSVPGWSAYSGRMGSISTSDSPHQSMGNGQTYGTSGQGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPHDRLIPAPDCALSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYDISASPSADAPGRHLLGSSSGTAALNLSSEGLVESSSAKPRRLSVSETRQIPSGDDDIDDDG* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01658 409 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872
Rops6g01658 409 SUPERFAMILY CCCH zinc finger 273 299 IPR036855 GO:0046872
Rops6g01658 409 Gene3D - 117 165 - -
Rops6g01658 409 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Rops6g01658 409 MobiDBLite consensus disorder prediction 378 398 - -
Rops6g01658 409 SUPERFAMILY CCCH zinc finger 318 342 IPR036855 GO:0046872
Rops6g01658 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 157 IPR000571 GO:0046872
Rops6g01658 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 342 IPR000571 GO:0046872
Rops6g01658 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 295 IPR000571 GO:0046872
Rops6g01658 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Rops6g01658 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 41 66 IPR000571 GO:0046872
Rops6g01658 409 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Rops6g01658 409 FunFam CCCH type zinc finger protein 267 355 - -
Rops6g01658 409 ProSiteProfiles Zinc finger C3H1-type profile. 269 297 IPR000571 GO:0046872
Rops6g01658 409 Gene3D - 261 344 - -
Rops6g01658 409 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Rops6g01658 409 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Rops6g01658 409 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Rops6g01658 409 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Rops6g01658 409 SMART c3hfinal6 84 111 IPR000571 GO:0046872
Rops6g01658 409 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Rops6g01658 409 SMART c3hfinal6 269 296 IPR000571 GO:0046872
Rops6g01658 409 Gene3D - 37 116 - -
Rops6g01658 409 SUPERFAMILY CCCH zinc finger 44 67 IPR036855 GO:0046872
Rops6g01658 409 SUPERFAMILY CCCH zinc finger 133 158 IPR036855 GO:0046872
Rops6g01658 409 PANTHER PROTEIN PHOSPHATASE RELATED 28 363 - -
Rops6g01658 409 FunFam Zinc finger nuclease 2 38 115 - -
Rops6g01658 409 MobiDBLite consensus disorder prediction 378 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01658 Rops-Chr6 33766907 33772468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01658 20 408 C2H2 Transcription Factor Family AT3G02830 60.476 5.36e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops6g01658 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01658 - - gmx:100786261 738.028