LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g01657	ATGTACCTACCTCTGTCTACTGCCATGGAAGAAAACAACAATGACAATAACAATAACAATCGTGAAATCTTAATATCAGATTCTCACGGAGGAGGTAAGCAGATAAGAGATTTTGATTTAAATGAAGAGCCTCCTTCATCTCCTATCCATGTCTTGCTTGACTTAAATGAAGAGCCTCCTCCTTCTTCTCCTATCCATGTCATGCTTGACTTAAATGAAGAGCCTCCTCCTTCTCCAATCAATATCATGCCTCCTAATTCTCAGGTTTCTGCTAATGATTGCCCCATGGAGGGAGAGCCTGAAAGACACGCTACAAAAGGAAGTCATGGACAAGTCGATTCGCACAATGATGCGAAAAGGTTGAAGTTTACAAATGTCGCTGATAAGGGCAAGAAGCCAATGTGTTGTTCTGAGGAAGCCCTGAAGAGTGTTCATTCAGGAGCAAAAGATAAAAATAACAACATAGAAGGCAAGACTAACTGTCATTCTCCTACACCTGCTGCTGGAGCCACTCAAGAAAACATGTCACCTGAAAAAGATGCTGCTGGTGCTCCTGAATCTGGGTCAAAGAGGAGCTACTACAGATGCACGGCTGAAGGATGTTCCGTAAAGAAACATGTGGAGAGGGATGCACACAATTTAAAATATATAATTAATACTTATGAGGGAAGACATAATCACGAAGCGCCCTACCCTGGAAACTCCACTAACATAAAGACAAGTGATCTACTTCCGAGTATTGCCATTGAGCTAGGGATTGTGTTACCTGGGAATCACAGAATCCCGATGGCTGAAGCACAAGTTCAAACTCTTGCACCTCAACATGGTACAAATCCTGAACTTGACAGTCCCAGTTTGGTTGGAAGCTTCAGGAATCATGGGTCTTCTTCCTCCACACCCCAAATGCCCATTTCTTCCTTGAACAACGACAGTCATACCACTATGCCTCATGGCACCCATGGACTGAACCCTGACCCTCAAGATGGATCTATTCCAATGTCACCACCATTTAATAATCCATCTTCTCAAGCTAGAGTTAATGATAATGGGTCTGGTCCAGTCTTTCCTTTCAGGGCAACATCTGAAGGTGAAAGGGACAGGTTTCCTGAGGCATAA	1116	0.4337	MYLPLSTAMEENNNDNNNNNREILISDSHGGGKQIRDFDLNEEPPSSPIHVLLDLNEEPPPSSPIHVMLDLNEEPPPSPINIMPPNSQVSANDCPMEGEPERHATKGSHGQVDSHNDAKRLKFTNVADKGKKPMCCSEEALKSVHSGAKDKNNNIEGKTNCHSPTPAAGATQENMSPEKDAAGAPESGSKRSYYRCTAEGCSVKKHVERDAHNLKYIINTYEGRHNHEAPYPGNSTNIKTSDLLPSIAIELGIVLPGNHRIPMAEAQVQTLAPQHGTNPELDSPSLVGSFRNHGSSSSTPQMPISSLNNDSHTTMPHGTHGLNPDPQDGSIPMSPPFNNPSSQARVNDNGSGPVFPFRATSEGERDRFPEA*	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g01657	371	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	190	275	IPR044810	GO:0003700
	Rops6g01657	371	Gene3D	WRKY domain	171	231	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	332	349	-	-
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	1	49	-	-
	Rops6g01657	371	ProSiteProfiles	WRKY domain profile.	191	230	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	274	320	-	-
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	145	190	-	-
	Rops6g01657	371	Pfam	WRKY DNA -binding domain	187	228	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	96	120	-	-
	Rops6g01657	371	SUPERFAMILY	WRKY DNA-binding domain	187	230	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Rops6g01657	371	SMART	WRKY_cls	178	229	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	274	371	-	-
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	157	172	-	-
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	90	120	-	-
	Rops6g01657	371	MobiDBLite	consensus disorder prediction	7	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g01657	Rops-Chr6	33723041	33729164	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g01657	191	230	WRKY Transcription Factor Family	AT5G56270	67.500	7.52e-14	71.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Rops6g01657		WRKY	7.6e-12	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g01657	K18835		-	gmx:100800211	125.946