Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01656 ATGGCCAACCACAAATTTCTATTGGCTATATCACTATGCATGGTTTTGGGTCCTTGTATCTTTATTGAAGCTGCTCCTCATGGCTCTCTTATCACAAAACTCCCTGGCTTTGATGGCTCTTTCCCATCCAACCACTACTCCGGATACATAACAATTGATGGAAATGGGGAGAGTGGGAAGAACCTGTTCTACTACTTTGTAAGTTCAGAAAGAAATCCAAGAAAGGATCCAGTTGTTCTATGGTTAAATGGGGGACCTGGCTGCTCCAGCTTCGATGGCTTCGTTTATGAGCATGGGCCATTTAACTTTGAGGCAGCTAAAAGGAAGGGAGGTCTGCCCACTTTACATGTCAATCCGTTCAGCTGGTCTAAGGTTTCCAACATTATTTATTTGGAATCTCCTGCGGGGGTTGGCCTTTCTTATTCCAAGAACTCGAGCCAGTACAATACAGGGGACCTACAAACTGCATCTGACACCCATGCTTTCCTCTTAAAGTGGTTTGAGCAGTTCCCTGAATTCCTTGGTAATCCATTTTATCTTTCTGGGGAATCTTATGCTGGAGTGTATGTGCCCACTCTAGCTCATGAAATAGTTGAAGGAATCAAGCGTGGTACTAAACCGGTGATCAAATTTAAGGGTTATCTGATTGGAAATGGTGTCACAGATGAAATATTTGATGGCAATGCTCTTGTCCCATTTGTCCATGGAATGGGTCTCATATCTGACGATATCTATAAGGATGCAGAAGCTTCTTGCAAAGGAGAGTACTACAAATTCAAATGTGGAAACGATGCTAATGATGAGTGCTGCAAGAACCTCAAAAGAGTTGATAGGGTTATTAACAGGCTTAACGTGTACTACACACTAGACTCATGCTACCATAACCCTCCTTCTGCAGCTGCCAAATTAAATGGAAGCTTGCCATTGAGTTTCCAGCAATTAGGAGCTACCATTAAGCCTCTCCCTGTGAGAAAGAGGATGTTTGGTCGAGCTTGGCCCCTTGGAGTAACCTTCGTTCCATCATGGCCCAAAGATAGTATTGCTTGTACTACTGATGATATAGCAAGTGCATGGCTAAACAACAAAGAAGTCAGGAAAGCTATTCATGCTGAGCTGAAAAGTGTGGCGGGTCCCTGGGTTTTATGCACTGATAGGCTAAATTACACTTCCAATGCTGGAAGCATGATCCCTTACCACAAGAATCTAACCAAGCAGGGCTATAGAGCACTTATTTACAGTGGTGACCATGATATGTGTGTGCCATTTACCGGAAGTGAAGCTTGGACTCGATCTATGGGATATAAGATTGTGGATGAATGGAGGCCCTGGCTCAATGATAACAAAGTTGTTGCTGGGTACTTGCAAGCTTACGATCACCAATTTACCTTCCTCACTATCAAGGGAGCTGGACACACTGTCCCTGAATATAAGCCGCGGGAGGCACTGGATTTTTATCGCCGATGGTTGGAAGGAAAACGAATTTAA 1485 0.4377 MANHKFLLAISLCMVLGPCIFIEAAPHGSLITKLPGFDGSFPSNHYSGYITIDGNGESGKNLFYYFVSSERNPRKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKRKGGLPTLHVNPFSWSKVSNIIYLESPAGVGLSYSKNSSQYNTGDLQTASDTHAFLLKWFEQFPEFLGNPFYLSGESYAGVYVPTLAHEIVEGIKRGTKPVIKFKGYLIGNGVTDEIFDGNALVPFVHGMGLISDDIYKDAEASCKGEYYKFKCGNDANDECCKNLKRVDRVINRLNVYYTLDSCYHNPPSAAAKLNGSLPLSFQQLGATIKPLPVRKRMFGRAWPLGVTFVPSWPKDSIACTTDDIASAWLNNKEVRKAIHAELKSVAGPWVLCTDRLNYTSNAGSMIPYHKNLTKQGYRALIYSGDHDMCVPFTGSEAWTRSMGYKIVDEWRPWLNDNKVVAGYLQAYDHQFTFLTIKGAGHTVPEYKPREALDFYRRWLEGKRI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01656 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Rops6g01656 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Rops6g01656 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Rops6g01656 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 461 474 IPR001563 GO:0004185|GO:0006508
Rops6g01656 494 SUPERFAMILY alpha/beta-Hydrolases 31 492 IPR029058 -
Rops6g01656 494 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Rops6g01656 494 Gene3D - 349 387 - -
Rops6g01656 494 FunFam Carboxypeptidase 24 314 - -
Rops6g01656 494 FunFam Carboxypeptidase 395 491 - -
Rops6g01656 494 ProSitePatterns Serine carboxypeptidases, histidine active site. 461 478 IPR033124 GO:0004185
Rops6g01656 494 FunFam Carboxypeptidase 348 493 - -
Rops6g01656 494 Pfam Serine carboxypeptidase 35 491 IPR001563 GO:0004185|GO:0006508
Rops6g01656 494 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 478 IPR001563 GO:0004185|GO:0006508
Rops6g01656 494 Gene3D - 395 491 - -
Rops6g01656 494 Gene3D alpha/beta hydrolase 24 327 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01656 Rops-Chr6 33699423 33704822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01656 354 492 Calmodulin-binding Proteins AT2G22960 47.482 1.18e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01656 K16296 - gmx:100790895 759.985