Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01648 ATGGATTTGGTATTCCTGAGAAAGGGTGAAGTACCCTCCTTATCAAAGGAAGACAAATCAGAGACATCGTTACATATTGCCTTTTGCATGAGGTTACTGATGGGGACTGAGCTAATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCATCAGTCCCACCAGGTTTTGAGTCATATACATCTTTCTCACTGAAGAGGGTAGAAGACAATGACAAACAAAATGATCAAAATATGACCAGCTGTTCAGCCTCTACAAGTGCTCCTGAATCACATTCAACTCTGGTGGAAAATGATGTTCAAGTTCGTGATACTGCTGCAAAGGTTCCTAAATCCCGTCGACGAAGACCATGGATTAACTATGGACAGTATGAGAACAGTTCAGAGGAAGACTCTGATTGTGAGCGACATGATCAAAATATCTCCTCAAGACCTTGTCTTCCTAAGGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCAGAAGATGCTCGTAGGCCCAATCTTGAGGATGCTCCTGTTTTCTATCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGAGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCATCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTACATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAGGGAGAAAGATGTCAAGAAATCAAAGTAATATGAAAAGGAAAAGGAGAAGATGCACAAGAATGGGAGTGGCTAATGGCCCTGGAACAGGACCTAATGCGGTATTTTTTGAAGCTGAAAGTTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGATGATTTTAAGGTCAAATACTTCAAGAAAAATGAGAATGTATCTCATTCAAGTGCCAATACAACAAATTTAAATGGTACTTCAGAGCCTTCTGTGGAAAACATTGAGGGTGAATATTGGCGGATGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGGTTTTTGGAAGTGGTTTTCCTAGCAATTCTAGTCATGTCGGTTCCACTTCGCATGAACAGTACATAAAATCTGGATGGAATTTAAATAACTTTGCAAGGCTGCCTGGATCACTGCTCTCTTATGAAAGCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTATCTTGGAATGTGCTTTTCCTCTTTTTGTTGGCATGTGGAAGATCATCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAGGATGCTTGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCTGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCGATCCTTAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCCGGGGACTTTGTTCTAACATTTCCTCGAGCCTACCATGCTGGGTTCAATTGCGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGCTGTACCGGGAGCAAGGGCGCAAGACTTCTATATCCCATGATAAGCTGTTGCTTGGGGCCGCTAGGGAAGCAGTACGAGCCCAATGGGAGCTTAATTTACTGAAGAAAAACAGTTCGGGTAATCTACAATGGAAAGATGTTTGCGGAAAGGATGGCCTTCTGGCAAAAGCACTCAAGGCACGGGTTGAGATGGAGCGAGCAAGAAGGGAATTTCTCTGCAGTTCTTCACAGGCATTCAAAATGGAGAGTAGTTTTGATGCTACAAGTGAAAGGGAATGCAACGTTTGCTTTTTTGATTTACACCTATCTGCAGCTGGTTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAATTTTGTTCATGCTCTTGGGATTCCAAATTTTTCCTCTTTCGTTATGATATTGGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTATACAGATGGGCAAAATTAGATCTTGGGCTGGCACTAACTTCTTATGTCTCAGCAGACAAGGAAACAATACTCAAGGAGTTGAGATTGCAGTCATCCAACTTGTCTCATTCTTCCAGGGCCATTGTGAATAAAGATGTGGCTTTGCATCCATCAAATAAATTCATTGAAGATTCTCAATTGATAGATGTTCCAATAAAGGATCAAGCACATTCAGCGAATAGCAAGGATCAGAGCTATCTTCAACAAAGGAAATCAGCAGAAGCTGTATCTCCTTTGAGTCACATGAAGGAACTGTTAACATTTAACAGCTCAAAACCTACATGTGAGATGGCTAATCGTAAGATCTCTGTTAATAAAGATGAATCTGTTAATTGTAGATCAAAGCCGAGAGCCCCTGGTTGTCAATCGTCTCAAGAGGATTCTTCATATGCTTTATCTCTGCCTTTAGCTCAACATGGAGGTGAGAAAAGTTCACATTACAGACATAACAACATTATACTTCTCAGTGATGATGAAGATGATGAAATGAAGATGCCAGATTTGAATAGAAAGAAGGAACATTCTCATATGCTTGCAGGTTCTAGAAATAAAGCAAGCCCATGTGACAATATAGAAAATACAAACTTGGCCCTCCCTGTGACAGATGCTGCTGTGATGGGTGAAAAGGATGCTATTACATTGCCTCGTGAAGATATGAGTTCGGGTTCAACTCAGCTTTTGCATGTGAAACAAGAATATCATGACCACGGAGGACCAGTTCTAGCTTCTACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTGGTGCAGAATCAGTTAGAAATATTTCAGCTTCTTCAGCAGTAGAGGCCCATGACCATTGTTTGGAAAGTTTGGAGCTTTGTCCTCTGAACCCACAGCACTCTGGCACTATCAAGGTTAAGAATGAGGATAATCAAGAAAAGTTTGGAGGATGTACCACTTCAAATGTGGCAGACAATGCAAGAGCTGTTAATGGAAACATCTCTTGCAGTTTAAACAATTACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGTATCAACTGCAATGTTGAACCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAGTTTTGGTGCAGCAGTCAGGCTATATTTACAAAGGGATTTAAAAGCCGTGTTAGATACATAAATGTCTTAGACCCATCCAGTATGTGTTACTATATTTCAGAAATTCTTGACGCTGGACGTGGTTGGCCTCTGTTTATGGTTTCTTTGGAAAATTGTCCAAGTGAGGTCTTCATTCATATATCAGCTACAAGATGCTGGGAACTGGTCAGAGAGAGAGTGAATCAAGAGATCACAAAGCAGCATAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCTGCGATAGTGCAGGCTATTGAGGCACTGGATCGAGGTCGAGTTTGCAATGAATATTGGGACTCCCGGCCCTACTCACGGCCTCAAGGGCAGATTTCACAAGCTTACCAAACCAATGTAAATGGTGGAAATGATAAAGGGGTTCTCAAGAATCAGCAAATGCCAGTTGGAGTTGTTGCAGTACTAAGGAGCCTATTTAAAAAGGTCAATGCTGAAGAATTGAACTCATTGTACAGCATTCTTACTGACAATAAGCTAGCAGCTGACCGAACCCTAATTGCACAGCTTCTCGATGAAGAGATTCACAAATCCCAACCACCATAG 3888 0.4177 MDLVFLRKGEVPSLSKEDKSETSLHIAFCMRLLMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVEDNDKQNDQNMTSCSASTSAPESHSTLVENDVQVRDTAAKVPKSRRRRPWINYGQYENSSEEDSDCERHDQNISSRPCLPKGVIRGCPDCSNCQKVVARWRPEDARRPNLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSTWEGSKFATRVQRIDKLQNRDSGRKMSRNQSNMKRKRRRCTRMGVANGPGTGPNAVFFEAESFGFEPGPEFTLETFQRYADDFKVKYFKKNENVSHSSANTTNLNGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPSNSSHVGSTSHEQYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYLGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNSSGNLQWKDVCGKDGLLAKALKARVEMERARREFLCSSSQAFKMESSFDATSERECNVCFFDLHLSAAGCRCSPDRYACLDHAKQFCSCSWDSKFFLFRYDIGELNILVEALEGKLSAVYRWAKLDLGLALTSYVSADKETILKELRLQSSNLSHSSRAIVNKDVALHPSNKFIEDSQLIDVPIKDQAHSANSKDQSYLQQRKSAEAVSPLSHMKELLTFNSSKPTCEMANRKISVNKDESVNCRSKPRAPGCQSSQEDSSYALSLPLAQHGGEKSSHYRHNNIILLSDDEDDEMKMPDLNRKKEHSHMLAGSRNKASPCDNIENTNLALPVTDAAVMGEKDAITLPREDMSSGSTQLLHVKQEYHDHGGPVLASTPVDLSFHIGLTGAESVRNISASSAVEAHDHCLESLELCPLNPQHSGTIKVKNEDNQEKFGGCTTSNVADNARAVNGNISCSLNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKFWCSSQAIFTKGFKSRVRYINVLDPSSMCYYISEILDAGRGWPLFMVSLENCPSEVFIHISATRCWELVRERVNQEITKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRGRVCNEYWDSRPYSRPQGQISQAYQTNVNGGNDKGVLKNQQMPVGVVAVLRSLFKKVNAEELNSLYSILTDNKLAADRTLIAQLLDEEIHKSQPP* 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01648 1295 ProSiteProfiles FYR domain FYRC motif profile. 1121 1211 IPR003889 GO:0005634
Rops6g01648 1295 MobiDBLite consensus disorder prediction 75 100 - -
Rops6g01648 1295 ProSiteProfiles JmjC domain profile. 393 556 IPR003347 -
Rops6g01648 1295 MobiDBLite consensus disorder prediction 829 848 - -
Rops6g01648 1295 Pfam C5HC2 zinc finger 646 696 IPR004198 -
Rops6g01648 1295 ProSiteProfiles FYR domain FYRN motif profile. 1061 1119 IPR003888 GO:0005634
Rops6g01648 1295 ProSiteProfiles JmjN domain profile. 181 222 IPR003349 -
Rops6g01648 1295 SMART cupin_9 393 556 IPR003347 -
Rops6g01648 1295 Pfam F/Y-rich N-terminus 1074 1116 IPR003888 GO:0005634
Rops6g01648 1295 Pfam F/Y rich C-terminus 1124 1207 IPR003889 GO:0005634
Rops6g01648 1295 SUPERFAMILY Clavaminate synthase-like 300 583 - -
Rops6g01648 1295 SMART fyrn_3 1075 1119 IPR003888 GO:0005634
Rops6g01648 1295 MobiDBLite consensus disorder prediction 72 111 - -
Rops6g01648 1295 PANTHER LYSINE-SPECIFIC DEMETHYLASE 174 1163 - -
Rops6g01648 1295 MobiDBLite consensus disorder prediction 248 267 - -
Rops6g01648 1295 Gene3D - 1068 1205 - -
Rops6g01648 1295 SMART JmjN_1 180 221 IPR003349 -
Rops6g01648 1295 Pfam JmjC domain, hydroxylase 423 539 IPR003347 -
Rops6g01648 1295 Gene3D Cupin 166 540 - -
Rops6g01648 1295 FunFam Putative lysine-specific demethylase JMJ16 1067 1205 - -
Rops6g01648 1295 Pfam jmjN domain 182 215 IPR003349 -
Rops6g01648 1295 Coils Coil 603 623 - -
Rops6g01648 1295 SMART fyrc_3 1125 1219 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01648 Rops-Chr6 33543046 33552738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01648 34 1290 JUMONJI Transcription Factor Family AT1G08620 54.393 0.0 1275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops6g01648 JmjC 4.9e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01648 K11446 - gmx:100800271 2182.53