Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01639 ATGAAAGGGCGATCGCACCGTCCTCAGAGTTCGGACCCACCGGACGAATGGGTCGACGGTTCATGGACCGTGGACTGCATATGCGGCGTTAACTTCGACGACGGTGAAGAGATGGTTAAATGCGACGAGTGCGGCGTGTGGGTTCACACGCGTTGTTCTCGTTACGTGAAGGGAGACGACATGTTCACCTGTGACAAGTGCAAGAACAAGAGCAACAACATCAGACCTGACAACAACACCGAGGAAACCGAGGTTGCTCAATTGCTTGTCGAGCTCCCAACGAAAACCATTTCTTTGGAGAACAACAATAATTCTTTTGCTTCCAAGGTTGCCTCTCGATCTCGACGCCCTTTCAAGCTTTGGACTGATATACCCATGGAGGAGAGGGTTCACGTTCAGGGTATCCCTGGTGGTGATCCTTCTCTCTTTTCAAACATGCCTTCGATTTTTAGTCCTCAATTGTGGAAATGCACTGGTCATGTTCCCAAGAAGTTTAATTTTCAGTATAGGGAGTTTCCCTCTTGGGATGAGAATGATGGTGCAACACAAGATAATGATAAAGAGACTACTGGTACTACTGTGTTGGCCTCTTCCCCTGTTGCGGCTTTGGTTGATATGAGATCTAGCCATGGCCGTGACGGCAAGACGGTTTTCAAGGATATGGGGATGAGCAAGTTTGGCAGTGAAGATGTGCCACGTGTGCACAATGCAATCAAGAAGGAGAGGAGTTTGCTGAGGCCTCTTGTTGTTCATGCCAGTAAGCGGAGGAAAGAGGACTCGGGGAATTCCAATTCCAAAGACCGGAGTGGGAAGAAGAGGGTTAAGACTTCTGATAAGGAGGTAGATCCCAAGAGGAGGAGTTCTTCACATTCGTCTAAAACAGCATTTACACCCGCCAGTGATGCAAAACAATTGGAGTTTTATGAAGACAGAGGTACGAAGATTTTCAAGGCTGACACTTGGAGCATAAAGAATAAAAACTTAAAAGACATAGTGGTTCAAGAACATATTTCTAATGATTATTTTGCTGTGGATACCATCGTGGAGGAGCCTAATAACAACTTGACAACTACTGAGGAGTCTTCAGAAGCCTTATATCCTAACACGACAAGACATAGTCTTTCTGTTGGAGATGCATTAGCAGAAGAGAAGACTGGCCATAAAGCTCCTAGTTTTGTTGAGACGTCTTTTAAGACTGATGATGCTGTTACATCTGTTCTAAAGCATAATCCCAATGGAAATGCTTCAGTTAAAGAAAAGGACGGAGATTGCTTGGCAGCTGATAATGTGGATGATACTTTAGTAGTAAGAAGCACTGTAAGTCCCCACACAGAAGATCACTGTGGTTCTGCACCAGAACTTATGGATAACCAAGTTTCTCAAGATCTTGACTGTAACCTGCATCCTAGCTTTGCAAAATGCAAAGTTAAGGTGAAGAGAGAAGATGACGGCGATAGTTTTAAGCTCTCCAATTTTCATTCTTCTCCTATCAGTAATCTTAGAAACAATGAAAAGCCATCTGATCACTCATCTGATATTGTTAAAGTGAATGATGCAGTGGTTCCCAGTTTACCATCATGTGAAAATAAGGTGGGTGATGTTGACATATCATCAGAAGTAGTCCCTGATGATCATTCAAATAAACCCAATGAACTACCTGGTAATTTTTATCATGGAAAACAAGAAGTGGAGGGGTCTGAAGGTTCCCTGGAAACACATAAGGGATTTTCAGAAACAAAAGATGGTTTGGATTCTGCTAAGGATCCATTAAAATCTGAAGCACTTGGATGTCCACATAAAATGCCAGCAGGTGCTGGAAAGTCGTCTCCAACTTTAACTATGAACTCCAAATCATTGAATCATGACTTCAAATCTGAAGATAATGAAAACCCTAATTCTCTTACAAAGCATGTAGTGATGGCTAATTGCAACATTCACATAAAGAATGAAAGTAGTTCGAGTGATGTTGCAAGGGATGAAATTCCAAGGAAGTCTGTGAGAGAGCGACCGAAATCCTCATTGAATTCCAATCCGAAAGGATTACATTCAAGCAAAAGTACACAAAATTCTGTTTCAAAGCTAGTAAATTCAGATGCGAGAGATTCTGTTTATGGTTCATCATCTAAAGCATCTTTGGTACATCAGACTGCAAGTATTTTAGGCACCAGTGAGACTAATGCATCATTGCACCATCAAAAGGCTTTACAAGTGCAGAATAAGATTTCATCTTCTGTTCCACAAAAAGTTGAAAGGTCTAACCAAAAAAACATCCATCCTTCCTCTAAGTTGAACCAGAGCAATGTGCCAACAGTGAATCCTTCTCCAACATCAAATTCTTCAATGCTGAGTGACGAAGAGCTTGCGTTGCTATTGCATCAAGAACTGAATAGTTCACCTCGTGTACCTCGGGTACCCCGTGCACGCCATGCAGGTAGCTTGCCACAGCTGACTTCCACTAGTGCTACAAACATGCTAATGAAGCGAACAACATCGGTTGGAGGAAAGGATCACTATTTGGTATCTAGAAGAAAATACAAGGATGCAACTAAAGATGGGTTTTGTAGTTCTCGTGAAACTGAAGACGAAGCTAAAAGGATAGAGAAGGAGAAGGGCCCATCCTCATCTGATCAGAGTAAACAAGATATGGCATATGTGGAAGATGCTTCTGTAAAGGAAGAAGGTGGTCGTGCATCTGCGACAGCCGCAAACTATATCACAAACAATGTTGTTTCTGCCAGCTCTGCCATTGCAAACAGTGGTCCACCCTCCCCTCCTGAGGATCAGAATTTGTCATTGACACGTAACTCACCCAGGAATATATCTGATGATGATACAGCAACTGCTGGAAGGCCAGTTCATCATACCTTACCTGGCTTGATCAATGATATTATGAGCAAGGGCAGGCGTATGACATATGAGGAACTCTGTAATGCTGTGCTACCGCATTGGCACAACTTGAGGAAGCATAATGGAGAGCGTTATGCATACTCAAGTCACTCTCAAGCTGTTCTTGATTGTTTGCGGAACCGACATGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGACAAATTCTAATAGGAAAAGGCGTAAGCTGGATGCTGAAGAATCTGATGATAATGGATATGACACGGGAAGAACTGCAAAAGAGGCCGAGGGGAAGAACTTTGAGTTGCATAAAGAAGAGTTCCCTAAAGGCAAGCGTAAGGCTCGAAAACGCAGGCGCCTGGCTCTTCAGGGAAGAGCAGTAAAGGATGTCAGGAGAAGACAAAAAGCTGACTCACTAACTGACGAGGATGTCGGTCCATTCTCCAATTCTAGTGAAGAGAGTATGTTTAGTGAGGATGAAATTCAAGTTGGCAGAATAGGTCCAGCAGGAAGTTCATCAGATGAGGAAGGTAGTGCCTAA 3408 0.4325 MKGRSHRPQSSDPPDEWVDGSWTVDCICGVNFDDGEEMVKCDECGVWVHTRCSRYVKGDDMFTCDKCKNKSNNIRPDNNTEETEVAQLLVELPTKTISLENNNNSFASKVASRSRRPFKLWTDIPMEERVHVQGIPGGDPSLFSNMPSIFSPQLWKCTGHVPKKFNFQYREFPSWDENDGATQDNDKETTGTTVLASSPVAALVDMRSSHGRDGKTVFKDMGMSKFGSEDVPRVHNAIKKERSLLRPLVVHASKRRKEDSGNSNSKDRSGKKRVKTSDKEVDPKRRSSSHSSKTAFTPASDAKQLEFYEDRGTKIFKADTWSIKNKNLKDIVVQEHISNDYFAVDTIVEEPNNNLTTTEESSEALYPNTTRHSLSVGDALAEEKTGHKAPSFVETSFKTDDAVTSVLKHNPNGNASVKEKDGDCLAADNVDDTLVVRSTVSPHTEDHCGSAPELMDNQVSQDLDCNLHPSFAKCKVKVKREDDGDSFKLSNFHSSPISNLRNNEKPSDHSSDIVKVNDAVVPSLPSCENKVGDVDISSEVVPDDHSNKPNELPGNFYHGKQEVEGSEGSLETHKGFSETKDGLDSAKDPLKSEALGCPHKMPAGAGKSSPTLTMNSKSLNHDFKSEDNENPNSLTKHVVMANCNIHIKNESSSSDVARDEIPRKSVRERPKSSLNSNPKGLHSSKSTQNSVSKLVNSDARDSVYGSSSKASLVHQTASILGTSETNASLHHQKALQVQNKISSSVPQKVERSNQKNIHPSSKLNQSNVPTVNPSPTSNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLTSTSATNMLMKRTTSVGGKDHYLVSRRKYKDATKDGFCSSRETEDEAKRIEKEKGPSSSDQSKQDMAYVEDASVKEEGGRASATAANYITNNVVSASSAIANSGPPSPPEDQNLSLTRNSPRNISDDDTATAGRPVHHTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRHEWARLVDRGPKTNSNRKRRKLDAEESDDNGYDTGRTAKEAEGKNFELHKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKADSLTDEDVGPFSNSSEESMFSEDEIQVGRIGPAGSSSDEEGSA* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01639 1135 PANTHER UNCHARACTERIZED 1 1127 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 846 875 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 1018 1135 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 538 632 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 1099 1113 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 1018 1064 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 671 703 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 564 588 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 915 957 - -
Rops6g01639 1135 SMART PHD_3 25 68 IPR001965 -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 915 943 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 650 703 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 846 896 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 245 299 - -
Rops6g01639 1135 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 245 289 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 730 780 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 1079 1096 - -
Rops6g01639 1135 MobiDBLite consensus disorder prediction 652 670 - -
Rops6g01639 1135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 74 IPR013083 -
Rops6g01639 1135 SUPERFAMILY FYVE/PHD zinc finger 14 72 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01639 Rops-Chr6 33434326 33441683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01639 24 67 PHD Transcription Factor Family AT5G22260 42.553 9.01e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01639 - - gmx:100810855 1549.26