Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01623 ATGGAACTTTCCAGCCAAGAAGGAGAAATCCCAATCCCAATAAACAGTACTTATGGTGGGGGATATGGGAATGTTCATGGACAGGGACATGGTCACATGATTCATGATGACCCTCCTCCACACCATAACCACATTATATCTTCCTCAACACCCCAAAACCCTTCAAATGGCTCTTCAATGCAAGCAGGCCTAGAGGATCATAGACATGGACCCTATAAGAAAGTGGTGAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCTATGGGAGGAAATGCCACTGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAAGAAGGGACCATAGAGGCACTTAACTGCTTAGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGATGAAGAGAATAGCAAAACTTTTGACCTGACCAGTGAACTGCCAGGACAAAGGACAAGGTATAGTACTCCGGACATGGGGTGCATGGTGTCCACTCCAAAGGATTCTGGTGGAAATAGAAGGAGGCCGGGGAGCATTGGGGAAGTTTCGGTCTATGTTCCTGGTCTAAGAATTCCTAAACCTGTTGATTTTGCACAGTCACTTGGCGATTACTTGTCCAAGAGTATAGTGGAACGCCTATCTGCTCTTAGAACTCGTATAGTTGTAATGGCTGGCCAAGAAGGTCCTACACTTACAAGAACAAAAAGGAAAAGTGCAACCCAACATGGAGGTTCAACACTGGCTGATCTTCTGCAGGCTCTTGAAGACTACTTGCCAGTACTTTTGGGATTAGTCAAAGATGGAAGCCATTTACAATACAAAGTACAATTTGTTTGGGTGAATCAGGAGGATGATGCAGAGGATACAGCCATGTCTAATGCTTGGTATGAAGTGTTATCAGTTTTGCATTTGATGGCAATGCTATCACTATCGCAGGCTAATTTATTACTTCTTCCTAGAACATCCAATGATGGATATCAGCTATCAGAAGAAAACAGACGAGCTTCTGTTGATATCTTCCTAAAGTCAGCTGGGTATCTGGACTGTGCTGTTAGGCATGTTCTTCCACAATTGCCAGCTGAGCTCAGGAGAAATTTACCAGTAGACCTTGCAGAAGGAGTTCTTCGAGCACTCTGTCTTCAAGCATTGGGACAGGGTGTAGATATCCAACTCGGAATGGCAATTGATAGTACCAAAGCCACTCTTGCAGTGAAGCGTAGACTTGCATGTGAGATGGTGAAATATTGGCAGCAGGCTCAGGATAATATTATGAACCTTCCATTATCAAATGGTTGGGGTGAAAAACATCGCCATTATGTGAAATGGAAATATGTTGAAGCAAAGGCTGCAGCATATTATTATCATGGTTTGATTCTTGACGAGGGAAATACAGAGAAATCTCACGGGATGGCTGTAGCTGCTTTGCAAGCAGCGGATGAGTATTTCAAGGAAAGTAAGAAGCTGTGTGAGGCATTCAATGCAGCACCTCCATTGTCAAGAAATCCACCACTTTGGGGGACCATGAAATATCTCTCTGAGAAAATTCCTAAGGATACTTCAAGCAAGGTGCGAATAAACCGTGATCTATATTCTTATGAGAGAATCATGGAGACAGCACCAACATTGCCTGATTTTGCTTTGGCCTTGAAACCAGATGAATATCAACTTCCTCAAGTGAGTCCCTCTTGGAGAGCAGAAAACGTGAATGGAGGACAAAGTGGCATCCCTAACAATCTCAAGGAATGA 1728 0.4381 MELSSQEGEIPIPINSTYGGGYGNVHGQGHGHMIHDDPPPHHNHIISSSTPQNPSNGSSMQAGLEDHRHGPYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCLACHCHRNFHRKEDEENSKTFDLTSELPGQRTRYSTPDMGCMVSTPKDSGGNRRRPGSIGEVSVYVPGLRIPKPVDFAQSLGDYLSKSIVERLSALRTRIVVMAGQEGPTLTRTKRKSATQHGGSTLADLLQALEDYLPVLLGLVKDGSHLQYKVQFVWVNQEDDAEDTAMSNAWYEVLSVLHLMAMLSLSQANLLLLPRTSNDGYQLSEENRRASVDIFLKSAGYLDCAVRHVLPQLPAELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLSNGWGEKHRHYVKWKYVEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADEYFKESKKLCEAFNAAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYERIMETAPTLPDFALALKPDEYQLPQVSPSWRAENVNGGQSGIPNNLKE* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01623 575 PANTHER UNCHARACTERIZED 153 562 IPR038898 -
Rops6g01623 575 ProSiteProfiles BRO1 domain profile. 177 575 IPR004328 -
Rops6g01623 575 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
Rops6g01623 575 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 127 IPR006456 -
Rops6g01623 575 Gene3D alix/aip1 like domains 187 564 IPR038499 -
Rops6g01623 575 MobiDBLite consensus disorder prediction 43 62 - -
Rops6g01623 575 SMART BRO1_2 177 553 IPR004328 -
Rops6g01623 575 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Rops6g01623 575 Pfam BRO1-like domain 187 481 IPR004328 -
Rops6g01623 575 CDD BRO1_Alix_like 175 550 - -
Rops6g01623 575 MobiDBLite consensus disorder prediction 142 171 - -
Rops6g01623 575 MobiDBLite consensus disorder prediction 21 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01623 Rops-Chr6 33186884 33210746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01623 1 129 ZF-HD Transcription Factor Family AT1G14440 49.645 3.72e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops6g01623 BRO1 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01623 - - gmx:100813397 751.125