Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01620 ATGGATGCATGGGAAATGCAGGAAGAAGTGAGCGGTCAATACATATCACCACGTGGCAATCGTGCAGCATCTCACAAACCAGATAAACGTCTTGAAAGACCAGCTGGGTCTTTGACAATCTCAATTAGTAACCCAAGAGAAAGTGAAAAAAAAGAAAGGTTTGTTGGGATGGCAACACGAAGATATGCTTTTGGAAGTTTGGATGAGGCTAACCATCCAGACTCCATGAGAGCAACCTTAGCTGAATTCGTTTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTACCCTTGCTCTCCGCAAGATTTACCATGATGCAGGTGCATCAGCAGGTGAACTAGTGGTAATTGCACTAGCCAAAGCTTTTGCTCTATTTGCTGCTATATCTGCTAGCATGCATGTATCCGGTGGCCATGTCAACCCTGCTGTTACTTTTGGTGCTCTTCTTGGTGGCAGGATCTCCGTCCTTAGAGCCATATATTATTGGGTTGCTCAACTTCTGGGTTCTATAGTGGCTGCCCTCTTGTTGAGGCTTGTCACCAACAACATGAGACCGCGGGGGTTCAGTGTGTCAATGGGTCTTGGTGCACTACACGGCCTTATATTTGAGATTGCCTTGACATTTGGTCTGATGTACGTTGTCTATGCCACTGCTATTGATCCCAAAAGGGGCACCATTGGCACAATTGCACCCTTAGCCATAGCACTTGTGGTTGGGGCAAACATCCTCGTTGGTGGGCCGTTTGATGGAGCATGCATGAACCCAGCTCAGGCTTTTGGGCCTGCCTTGGTGGGCTGGAGATGGCACTACCACTGGATCTTCTGGGTGGGTCCATTGCTTGGGGCTGCCTTGGCTGCACTCATATATGAATACATTATGGTCCCAACTGAGCCTCCTCATCCTCATCACCAACCTTTGGCTCCTGAAGATTACTAG 939 0.4824 MDAWEMQEEVSGQYISPRGNRAASHKPDKRLERPAGSLTISISNPRESEKKERFVGMATRRYAFGSLDEANHPDSMRATLAEFVSTCIFVFAGEGSTLALRKIYHDAGASAGELVVIALAKAFALFAAISASMHVSGGHVNPAVTFGALLGGRISVLRAIYYWVAQLLGSIVAALLLRLVTNNMRPRGFSVSMGLGALHGLIFEIALTFGLMYVVYATAIDPKRGTIGTIAPLAIALVVGANILVGGPFDGACMNPAQAFGPALVGWRWHYHWIFWVGPLLGAALAALIYEYIMVPTEPPHPHHQPLAPEDY* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01620 312 Gene3D Glycerol uptake facilitator protein. 60 299 IPR023271 -
Rops6g01620 312 PRINTS Major intrinsic protein family signature 236 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 PRINTS Major intrinsic protein family signature 273 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 PRINTS Major intrinsic protein family signature 158 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 PRINTS Major intrinsic protein family signature 121 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 PRINTS Major intrinsic protein family signature 203 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 Pfam Major intrinsic protein 70 290 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 ProSitePatterns MIP family signature. 139 147 IPR022357 -
Rops6g01620 312 MobiDBLite consensus disorder prediction 1 43 - -
Rops6g01620 312 FunFam Probable aquaporin TIP1-1 60 307 - -
Rops6g01620 312 NCBIfam MIP family channel protein 81 290 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 PANTHER AQUAPORIN-8 62 298 IPR034294 -
Rops6g01620 312 CDD MIP 77 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01620 312 SUPERFAMILY Aquaporin-like 71 304 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01620 Rops-Chr6 33164131 33165669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01620 58 312 Major Intrinsic Protein MIP AT1G73190 69.318 4.11e-123 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01620 K09873 - gmx:100814469 428.328