Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01614 ATGATGAGAAACTCTGAGGCAAACCAAGTGGCTATGGAGATAGAGGCAGGGACAGCCCTGCCAGGGTTGAGTCCTCTCAGTGAGACCCTTTGGAGGCAGAAGACAAACACAGAAATCATTGGAGATGTCTCAGCGAGGCTCACTTGGAAGGACCTAACTGTGATGGTCACTCTCAGCAATGGAGACACACAGAACGTTTTGAAGGGTCTAACTGGGTATGCTGAACCTGGAACCTTCACAGCTCTCATGGGTCCCTCTGGTTCAGGCAAATCTACACTGCTTGATGCTCTGTCTAGTCGTCTAGCAGCAAATGCCTTCCTCTCAGGCACCATCCTCCTCAATGGTCACAAAACCAAGCTCTCCTTTGGCACTGCAGCTTATGTGACACAAGATGACAACTTGATTGGTACACTAACGGTAAGAGAAACGATTTCTTATTCAGCTCGTCTGCGCTTGCCTGATAAGATGGCATGGTCAGATAAGCAAGCTCTGGTTGAGAGTACAATTGTAGAGATGGGTCTTCAGGATTGTGCTGATACAGTAATTGGAAACTGGCATTTGCGTGGTATCAGTGGAGGAGAGAAGAGAAGGGTTAGCATTGCCTTGGAAATCTTGACGAGGCCTAGATTACTTTTCCTTGATGAGCCAACTAGTGGACTTGACAGTGCTTCGGCTTTCTTTGTGACTCAGACATTAAGAGCCCTGGCAAGGGATGGTCGAACTGTGATAGCTTCTATTCATCAGCCTAACAGTGAAGTGTTTGAACTATTTGACCAATTATACTTGCTTTCTGGGGGCAAAACTGTTTATTTTGGCAAGGCTTCGGAGGCATATGAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTTTGAGGAACCCATCAGATCATTTCCTTAGGTGCATCAATTGTGACTTTGACAAAGTCAAAACCACTCTTGAAGGGTCCATGAAGCTGAGGTCTGAGGGACGTGATGATCCCCTGGACAAGATCACCACTGCTGAAGCTATCAGAACTCTTACTGACTACTACCCTACTTCTCAGTATTCTTATGCTGCAACACAGAAAGTGGACGACATATCAAAAGTTAAGGGAACCATGCTTGATGCAAGTGGAAGTCAGGCTAGTTTCTTGATGCAATCTTACACCTTAACCAAGCGCTCATTCACCAATATGTCAAGGGATTTTGGATACTACTGGCTTAGGCTTGTGATCTATATTGTAGTCACCATCTGCATTGGAACTATTTATATGAACGTGGGAACGGGCTACAACTCAATTCTGGCAAGGGGTTCATGTACATCTTTTATCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGGTTCCCTTCATTTATTGAAGACATGAAGGTTTTCCAAAGAGAAAGGCTTAATGGTCACTATGGTGTCACTTCATTTGTCATCAGCAATACATTGTCTGCAACACCATTCCTAATATTGATCACCTTTCTCTCGGGAACTATTTGTTACTTCATGGTTCGCCTTCATCCTGGCTTTTGGCACTATCTGTTCTTTGTCTTGTGCCTTTATGCCAGTGTTACTGTGGTTGAAAGCTTAATGATGGCCATTGCCAGCATTGTCCCCAACTTCCTGATGGGTATCATAATAGGAGCTGGAATTCAGGGCATATTCATGTTGGTCTCTGGCTTCTTTAGGCTCCCACATGATATACCAAAGCCAGTTTGGCGCTATCCAATGTCATATATCAGTTTCCACTTCTGGGCATTCCAGGGACAATACCAAAACGATCTGCGAGGCTTGATATTCGACAACCAGACACCAGAGCTTCCAAAGATACCTGGTGAATACATACTGGAGCATATCTTCCAGATTGATGTGAACCGATCTAAATGGATAGATTTAAGTGTAATCTTAAGCATGATTGTCATCTACCGCCTTATCTTTCTCATTGTGATCAAGTTCAATGAGGATGTTACACCATGGGTTAGAGGTTACATAGCTAGGAGAAGAATGCAGCAGAAGAGTGGAACCCAGAATACAACTATTGCTCCTGATGTTCTCACTCAATCCCCCTCCCTTAGAACATATTTCTCGAGTCAAACAACTGGTGTTACTCACAGAACATAA 2109 0.4419 MMRNSEANQVAMEIEAGTALPGLSPLSETLWRQKTNTEIIGDVSARLTWKDLTVMVTLSNGDTQNVLKGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMAWSDKQALVESTIVEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILTRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPNSEVFELFDQLYLLSGGKTVYFGKASEAYEFFAQAGFPCPALRNPSDHFLRCINCDFDKVKTTLEGSMKLRSEGRDDPLDKITTAEAIRTLTDYYPTSQYSYAATQKVDDISKVKGTMLDASGSQASFLMQSYTLTKRSFTNMSRDFGYYWLRLVIYIVVTICIGTIYMNVGTGYNSILARGSCTSFIFGFVTFMSIGGFPSFIEDMKVFQRERLNGHYGVTSFVISNTLSATPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPHDIPKPVWRYPMSYISFHFWAFQGQYQNDLRGLIFDNQTPELPKIPGEYILEHIFQIDVNRSKWIDLSVILSMIVIYRLIFLIVIKFNEDVTPWVRGYIARRRMQQKSGTQNTTIAPDVLTQSPSLRTYFSSQTTGVTHRT* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01614 702 Pfam ABC-2 type transporter 380 586 IPR013525 GO:0016020|GO:0140359
Rops6g01614 702 SMART AAA_5 76 247 IPR003593 GO:0016887
Rops6g01614 702 FunFam ABC transporter G family member 11 41 284 - -
Rops6g01614 702 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Rops6g01614 702 Pfam ABC transporter 67 218 IPR003439 GO:0005524
Rops6g01614 702 Gene3D - 40 285 IPR027417 -
Rops6g01614 702 Pfam ABC-2 type transporter 247 303 IPR043926 GO:0140359
Rops6g01614 702 CDD ABCG_EPDR 44 272 - -
Rops6g01614 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 290 IPR003439 GO:0005524
Rops6g01614 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 284 IPR027417 -
Rops6g01614 702 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 36 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01614 Rops-Chr6 33093876 33099226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01614 59 258 Calmodulin-binding Proteins AT2G36910 30.332 4.41e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01614 K05681 - gmx:100816389 1248.8