Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01595 ATGGCCACCAGGCGTTTGAGGGCATTCAAGCGGTGGATGAAGTCTAAGGGATTCGAATGGAGTGATGCATTGGAGTTTGTGGACACCCCAGAAGAGGGAATAGCTGTGAGAGCTTTGTGTCAATTGAAGGAAGGTGATGTGGTGGCCAAGATGCCAAAGGAAGCTTGCCTTACCATCAAGACCAGTGGTGCAAGTGAGATCATTGAAGATGCTGGTTTGGGTGGCCATTTGGCGCTAGCAGTTGCCATCATGTATGAGAGAAGCTTGGGTGAGGACTCACCTTGGGCTGGTTACCTTCAACTCTTGCCTCATCAAGAGTGCTTGCCTTTGGTTTGGACCCTTGACGAAGTAAATTATCTTTTGTGTGGTACTGAACTTCACCAGACAGTTCAAGAAGACAAAGCTCTTATCTATGATGACTGGAAAGAGAATATTCTTCCCCTATTGGATTTAGCACCTTCAAAGCTTAACACAAAATTCTTTGGTATAGAAGAATACTTTGCAGCGAAAAGTCTTATTTCTTCACGATGTTTCGAGATAGATGATTACCATGGTTCTGGCATGGTTCCCCTGGCAGATCTATTCAATCATAAAACAGGTGCAGAAGATGTGCATTTCACAGCTACACCATCTAATGATGAATCTGACAATGGCATTGATGGTTTTGACGAGAGCATTGTTGATGAAGAAGCATTGGCTCAAAATTCCTCTGTAGATATGTCTGAGTTGAATACTGCTAACGACGGGAACCGCATTGTTAGTGAAGTGGACTGTTCTTCGGATACTGAATGTGATACTACACTGCTGGAGATGATTGTGATAAAAGATGTCAGCAGTGGAGATGAGGTATTTAATACTTACGGATTATTGGGTAATGCTGCTTTGCTCCATAGATATGGATTTACTGAGCCAGATAATTCCTATGATATTGTTAACATTGATTTGGAACTAGTACATCGATGGTGTTCTTCTTTGTTTTCTGACCGCCACTGTAGAGCAAGAATCTCCCTTTGGAGAAGATTAGGCTATTCTGCATGTGGCTACCAAAACTCTGAATATTTTGAGATCTCATTTGATGGAGAACCACAGATAGAACTCCTCATTTTATTACACATCATGTTATTTCCAGATGATGCCTACCATAAGTTAAACCTATCAGTATCAATTGCTGGAAATGGTCATGAATCAAGTGAAACCACTCTTTTGAATGATAATATCTTTCCAAAGAAAGCATCTGATATGAGCAAGGAATCCTTGCTGACTAAAAAAGTTTGTGATGCTCTGTTGTCACTCGCTGATATGAGGGAGAGTCTCTATGGTTTGAAATCAATAGAAGATGATATTGAGGCATTGGGAAGGTGTAGTTTAGTTAGAGAGAGAAAGCTGTATCATTCTTTGATGCTGCGCATCTGTGAAAGGAAGATCCTTCAAAAGCTCAGAAATTATGCTTCACAGTCATTTAAGATCACTAATCATGGTTCTGCAAGGAAGAAGTTGAAAAGGACAACCAAGAAAAAGAATGGACTTTTTTAG 1533 0.407 MATRRLRAFKRWMKSKGFEWSDALEFVDTPEEGIAVRALCQLKEGDVVAKMPKEACLTIKTSGASEIIEDAGLGGHLALAVAIMYERSLGEDSPWAGYLQLLPHQECLPLVWTLDEVNYLLCGTELHQTVQEDKALIYDDWKENILPLLDLAPSKLNTKFFGIEEYFAAKSLISSRCFEIDDYHGSGMVPLADLFNHKTGAEDVHFTATPSNDESDNGIDGFDESIVDEEALAQNSSVDMSELNTANDGNRIVSEVDCSSDTECDTTLLEMIVIKDVSSGDEVFNTYGLLGNAALLHRYGFTEPDNSYDIVNIDLELVHRWCSSLFSDRHCRARISLWRRLGYSACGYQNSEYFEISFDGEPQIELLILLHIMLFPDDAYHKLNLSVSIAGNGHESSETTLLNDNIFPKKASDMSKESLLTKKVCDALLSLADMRESLYGLKSIEDDIEALGRCSLVRERKLYHSLMLRICERKILQKLRNYASQSFKITNHGSARKKLKRTTKKKNGLF* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01595 510 Gene3D - 304 493 IPR036464 -
Rops6g01595 510 PIRSF RMS1_SET 1 487 IPR011383 GO:0016279|GO:0018026
Rops6g01595 510 SUPERFAMILY SET domain 4 206 IPR046341 -
Rops6g01595 510 ProSiteProfiles SET domain profile. 22 288 IPR001214 GO:0005515
Rops6g01595 510 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 452 - -
Rops6g01595 510 Pfam SET domain 33 288 IPR001214 GO:0005515
Rops6g01595 510 Gene3D set domain protein methyltransferase, domain 1 2 301 - -
Rops6g01595 510 SUPERFAMILY SET domain 255 307 IPR046341 -
Rops6g01595 510 CDD SET_LSMT 23 302 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01595 1 499 NAC Transcription Factor Family AT3G56570 55.722 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g01595 SET 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01595 - K05302 gmx:100794971 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01595 6 32854634 32858387 Rops6g01595 6 32854634 32858387 ECH