Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01593 ATGGATGTTGACAAGAGGCAAGAGAAAACGATAAGATACAAGGAATGTCTCAAGAATCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGGTGTGGTGAGTTCATGCCTGCTGGAGAAGAAGGCACCCTTGAGGCTCTCAAGTGTTCTGCTTGCAATTGTCACAGAAACTTTCACAGAAAAGAGATAGAGTCTGATTCCAATTGCCCTTGTCAACATTATGCTCTTCCACTCATTACTGATACTACTCACATGAGGCCCATTTTAACTCATTCATCTCCCAACAAAAGTGGGTCTATTAGTCCTTCTGATCAGTATGATGAGAAGGAATGTGAATATGGGACTAAGGAGGTGGAAAATCCAACTGAAAATGTGAAGAAGAGGTCAAGAACCAAGTTCACACAAGAACAGAAGGAGAAGATGCTGGGTTTTGCAGAAAAGGCTGGGTGGAGGATACAGAAGCTAGAGGAATCTGTAGTGCAGAAGTTTTGTCAAGAGGTTGGAATCAAGAGAAGGGTCCTCAAAGTGTGGATGCACAATAACAAGAACACTTTTGCCAAGAGGAATCTCTCCACTATAGAGCTAGCATGA 591 0.4298 MDVDKRQEKTIRYKECLKNHAAAIGGNATDGCGEFMPAGEEGTLEALKCSACNCHRNFHRKEIESDSNCPCQHYALPLITDTTHMRPILTHSSPNKSGSISPSDQYDEKECEYGTKEVENPTENVKKRSRTKFTQEQKEKMLGFAEKAGWRIQKLEESVVQKFCQEVGIKRRVLKVWMHNNKNTFAKRNLSTIELA* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01593 196 SUPERFAMILY Homeodomain-like 122 187 IPR009057 -
Rops6g01593 196 MobiDBLite consensus disorder prediction 88 132 - -
Rops6g01593 196 FunFam Zinc-finger homeodomain protein 2 114 187 - -
Rops6g01593 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 62 IPR006456 -
Rops6g01593 196 MobiDBLite consensus disorder prediction 103 132 - -
Rops6g01593 196 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 63 IPR006456 -
Rops6g01593 196 Gene3D - 113 187 - -
Rops6g01593 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 184 - -
Rops6g01593 196 Pfam ZF-HD protein dimerisation region 11 63 IPR006456 -
Rops6g01593 196 NCBIfam homeobox domain, ZF-HD class 126 183 IPR006455 -
Rops6g01593 196 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01593 Rops-Chr6 32827451 32828041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01593 11 194 ZF-HD Transcription Factor Family AT1G14440 51.759 3.27e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops6g01593 ZF-HD_dimer 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01593 - - gmx:100793926 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01593 6 32827451 32828041 Rops6g01593 6 32827451 32828041 ECH