Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01589 ATGGTCGTGAGCGGTGGGAAGCCTTTGAAGCGCATGAAGAGGAGAGTCACCGCCGATTTCTACGACTTCCACTCGTTCCCCTCGCTGTCCCTCGCCGCATCGGAAAATTTCTCCGGCGGACCTTTTCGATCCAACGTCCGTTCCTTCCTCACCAAGCACGCGCTGCTTCCACCGCCATCGGCGCTGTTCCCACACCTGCTGACGTGGCAGATCCTCTTTCGTGTCGGCGAGCTCACCGAGGACCCCGAATCGGGACCGGCGATGGTGTGCCTCGACGTCGTGGAAGAGGACGTGGCCAGATCCAGGTCTGTTTACTGCGATCAGTGTCGAGTTTTCGGTTGGAGTGGCCACCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAAGCTGATGGGAGCTCTATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGTAAGTCATGCAACCATGTGACAACCACTGATGATGTTGAAGACTGGGTGTACAACCAATTGGAGAACACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGCTGCCATATTATGGATTTCTGGGACCGCCTATGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTTTCGAAGAAATATGGGCTAGAGTACCGCGTACTCCATGCCATTACGAAGGGACATCCGTGGTATGGTGATTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTAACACAGGAGGCATATGAGTCTGCTGTTGAAAGCCTAGCTAATCTACCCTTGTCCGTCTTCCTCTCCCAGGGACAAAAGCCCCACTCTCGTGTGCAGGACATGATCTCATACTACCGGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTCTTTTGTTTTTTGATGGGTTTGATTCATGATGCTCGCAAGAATGCATCAAAGGTTGATGACATAACCTGCAAGAAGCGTCGTATTAATGCTTCTGGACTATCAAGTTCTTGGGAGAAGAGTGACATTGAACGGGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCCAATTGGGTCAGCTGGCGTGCTCTTAGGGGTGCTGTCTGCAAGGTGGCCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGAAAAGTGGTCTGTGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTTGAGGCTGCAAGTGGTGCATGCTATGGAATTATAGGGAACAATAATTCTTCAGGATCAAAGTATCCATCTGAAGAGAATCTCCTACAATGCTTGAGATATTTATACGAGTCCTTGCTTCATCCTCAGATGATGCAATACCATGTTGAAGAAGGGACTCGGACTCTTGCCCTGAGCTCAGCTCAGAAGCTTCTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAGATGTTGCCAATGTCAGATTTGTCTAAGATACGCATCTCATGTCAAGTTGAACTTGTGGACGAGTCTGAAGATTCGTCAGCTACAACTCCACTAGAATTAGTTGTGCTGCCCATGAAAGCCACGGTGTCTGACCTTAAGATGGAAGCAGCAAATGCTTTTCAAGATGTGTATCTAATGTTTAGAAGATTTCAAGTAGATGAGCTAATTGGCTATAGCGGTGTAGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCAAAAGAGGAGGTTCGTGTCCGAGGAAGATGCATTGGGAAGAATGGGTTGAGCAAGTTCCGAATGGAACGAGGACTTGAGAGGTGGACTGTAGAGTGCAGCTGTGGCGCTAAGGATGATGATGGGGAAAGAATGTTGGCTTGTGATGTATGTGGAGTATGGCGGCACACTAGGTGTTCTGACATTCAAGACACTGATCCTGTTCCAGCTCGTTTTGTTTGCCCAAGATGCCAAAACTCGGACTCGAAGCCCAAATCTAATGGGCACTGTAAAGATGACACTGTGACTAACGTTAGTACTAGTACTGGTTGCTTTGGAAACGGCTTCCCAGTGCCTTCTGATGTTCGTTAA 2136 0.4822 MVVSGGKPLKRMKRRVTADFYDFHSFPSLSLAASENFSGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRVGELTEDPESGPAMVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYNQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRVLHAITKGHPWYGDWGYKFGSGSYCLTQEAYESAVESLANLPLSVFLSQGQKPHSRVQDMISYYRSLSEHELVNMRDLFCFLMGLIHDARKNASKVDDITCKKRRINASGLSSSWEKSDIERVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVCGGMVVNSRCNPQTGVYEFRLEAASGACYGIIGNNNSSGSKYPSEENLLQCLRYLYESLLHPQMMQYHVEEGTRTLALSSAQKLLDCKQFVKDYSPEMLPMSDLSKIRISCQVELVDESEDSSATTPLELVVLPMKATVSDLKMEAANAFQDVYLMFRRFQVDELIGYSGVDDSTQVKLLLGSKEEVRVRGRCIGKNGLSKFRMERGLERWTVECSCGAKDDDGERMLACDVCGVWRHTRCSDIQDTDPVPARFVCPRCQNSDSKPKSNGHCKDDTVTNVSTSTGCFGNGFPVPSDVR* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01589 711 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 686 - -
Rops6g01589 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 679 IPR013083 -
Rops6g01589 711 Pfam PHD-finger 628 674 IPR019787 -
Rops6g01589 711 ProSiteProfiles Zinc finger PHD-type profile. 625 675 IPR019787 -
Rops6g01589 711 CDD PHD_MMD1_like 627 672 - -
Rops6g01589 711 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Rops6g01589 711 SMART PHD_3 627 673 IPR001965 -
Rops6g01589 711 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01589 Rops-Chr6 32804998 32809801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01589 77 672 PHD Transcription Factor Family AT5G22260 30.000 1.38e-83 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops6g01589 PHD 7.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01589 K26271 - gmx:100818189 1242.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01589 6 32804998 32809801 Rops6g01589 6 32804998 32809801 ECH