Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01587 ATGGCTTCAATGAATGAGCAAAAGGGAATTGAGCTCTTTCAAGGCCAAGCTCTGTTGTACATGCAGATGTTGGGTTTCCTAAAACCTATGTGTCTTAAGTGGGCTGTCCAACTAGGTATTCCAGACATAATACACAACCATGGGAGACCCATTACTCTTCCTGAGTTGGTGTCAACTTTGCAAGTTCCACCAGCTAAATCTAGTTTTGTGCAGCGGTTCATGCGCTTTTTGGCACACAATGGAATCTTTGAAATCCATGTGAGTCAAGAAGATCATGAAGCATTTGCTCTAACTCCTGCATCAAAGCTTCTAGTCAGTGGCCCCGACCATTGTTTATCTCCAATGGTTCAGTTGATGACTGATCCATTTCTGCTGAACAAATACCACCAATTGGGGAATTGGATTTGTGGGGAGGACCCCACAATATATGAGACAGCCTTAGGAACAAGCTTTTGGGAACAACCAGCATACATGAGTCTCTTCAATGAGGCAATGGCAAGTGATTCTCTAATGGTGGACTTGGCATTGAAAAATTGCAGTTCAGTAGTGGCAAACTTGTCATCAGGAAGCAAAAATTTGAGTTATGTTGGTGGGGACATGTTCAAATCTATCCCTCAAGCAGATGCAGTTTTACTGAAGTGGATTTTACATGATTGGAGTGATGAGAACTGCATAAAGATCCTGGAAAACTGTAAAGATTCGATTTCAAGCAAAGGAAAAGTGATTATCATAGATATTGTAATAAATGAAAAGCAAGACGACCAATATATGACTCAAACAAAGCTCAGTATGGATATGATTATGTTGACCATTAATGGAAAAGACAGAACTGAAAAAGAATGGAAACAACTCTTCATTGAAGCAGGATTCAAACACTACAAAATATTTCCCATCTTGGGTTTTAGATCCCTTATTGAGGTCTATCCTTAG 930 0.3989 MASMNEQKGIELFQGQALLYMQMLGFLKPMCLKWAVQLGIPDIIHNHGRPITLPELVSTLQVPPAKSSFVQRFMRFLAHNGIFEIHVSQEDHEAFALTPASKLLVSGPDHCLSPMVQLMTDPFLLNKYHQLGNWICGEDPTIYETALGTSFWEQPAYMSLFNEAMASDSLMVDLALKNCSSVVANLSSGSKNLSYVGGDMFKSIPQADAVLLKWILHDWSDENCIKILENCKDSISSKGKVIIIDIVINEKQDDQYMTQTKLSMDMIMLTINGKDRTEKEWKQLFIEAGFKHYKIFPILGFRSLIEVYP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01587 309 PANTHER O-METHYLTRANSFERASE 15 179 IPR016461 GO:0008168
Rops6g01587 309 PIRSF O-mtase 1 188 IPR016461 GO:0008168
Rops6g01587 309 PIRSF O-mtase 178 309 IPR016461 GO:0008168
Rops6g01587 309 Pfam O-methyltransferase domain 190 291 IPR001077 GO:0008171
Rops6g01587 309 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 308 IPR029063 -
Rops6g01587 309 Gene3D Vaccinia Virus protein VP39 184 309 IPR029063 -
Rops6g01587 309 Gene3D Vaccinia Virus protein VP39 107 183 IPR029063 -
Rops6g01587 309 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Rops6g01587 309 SUPERFAMILY "Winged helix" DNA-binding domain 11 107 IPR036390 -
Rops6g01587 309 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 182 309 IPR016461 GO:0008168
Rops6g01587 309 FunFam Coniferyl alcohol 9-O-methyltransferase 2 104 - -
Rops6g01587 309 Gene3D - 1 104 IPR036388 -
Rops6g01587 309 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 153 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01587 Rops-Chr6 32795229 32796398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01587 17 295 Monolignol Biosynthesis Gene Families AT5G54160 29.697 1.03e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01587 K22588 K13262 gmx:100819853 463.766