Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01574 ATGGGTTTTTCAGTACTAGTTCTTCTCTTCTCTATCATGTTTTTCCTCTTAAACCCAACATGGGTATGTGGGAATGAAGAGCTAAGAGCACTCATGGACATGAAGGCCAGTTTGGATCCAGAGAGTCATTATCTACTCTCCTGGACTATCAATGGTCACCCATGTTCTTTTGAAGGAGTAGCATGCAATGAGAAGGGTCAGGTGGCAAATATTTCTTTGCAGGGAAAAGGTCTCTCAGGGAAGCTTTCACCAGCCATTGCTGGGCTCAAGCACTTGACAGGACTATACTTGCATTATAACTCTTTGCATGGAGAGATACCAAGAGAAATTGCAAACTTGACAGAGCTTAGTGATTTGTATTTGAATGTGAATCATCTGTCTGGGGAAATCCCTCCTGAGATCGGCAACATGGAGAACTTGCAAGTTTTGCAGCTTTGTTATAATCAGTTGACAGGAAGCATACCAACACAGCTTAGTGCTTTGAAAAAGCTAAGTGTAGTTGCTCTGCAGTCGAACCAGTTAACTGGTGCTATCCCTGCTAGTCTAGGTGATTTGAGTATGCTGGTGAGGCTAGATTTGAGCTCTAATAACCTCTTTGGTTCCATTCCCACTAGCCTGGCTGATGCTCCTTCACTCAAAGTTCTGGATGTTCACAACAACACACTTTCTGGGAATGTACCTCCTGCTCTTGAGAGGCTAGATGATGGATTTCTGTATGAATCCAATCTGGGGTTATGTGGAGTTGGGTTTCCATCCCTGAAAACTTGCAATTCTTCAGATCATGTTAATCCAAGCAGACCTGAACCTTATGGAGCATCAACAAAAGATATCCCAGAAACTGCTAATGTGAAGCTACCTTGCAGTGGAACTCGGTGCCTTAATTCATCAAAATCCAATCAAGCCACATCAATTACTATTGGCATATTTGTGGTTATAATTGCACTGTCAGCAATTGGTATTTTGACCTTCACACTATATCGTAGGCGAAAACAAAAGCTTGGAAATGCTTTTCATATCTCTGATAGCCGTCCAAGTACTGATGAAGGAAAGGGTATATACAGGAAAAATGGATCTCCATTAGTCAGCCTTGAGTACTCTACTGGATGGGACCCTTTGGCTGATAGTAGGAGTTTCAATGGGGATAGCCAAGATATGTTCCAGAGCTTCAGGTTCAGCTTGGAAGAAGTGGAGTCAGCCACTCAATATTTCTCACAGTTGAATTTGTTGGGCAAGAGTAACTTCAGTGCAACATATAAAGGGGTTTTAAGAGATGGATCTGTTGTGGCTGTGAAGAGCATTAGTAAAACTAGTTGCAAGTCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATCTTGACCTTACTGAGGAATGATAATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGTGAATGCTTTCTGATTTATGATTTTGTTTCTAATGGAAATCTGTCACGCTTCCTTGATGTGAAGGAAGGTGAAGAAGTTCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTATGGCATATTTACATGCATACAAAGCAAACAAACCCGTTCTTGTTCACCAAAACATCTCAGCTGACAAAGTTTTCATTGATAAGCGATACAACCCCTTGCTGGCAGATTCTGGCCTGCACAAGCTTCTTACTAATGATATTGTCTTCTCTGCACTTAAGGCTAGTGCAGCAAAGGGTTACCTGGCCCCTGAATACACCACTACTGGCCGGTTTGCTGAGACAAGTGATGTTTATGCTTTTGGGGTGCTGCTTCTCCAAATCCTTTCAGGGAAGCAGGAAATAACTAGCTCAACAAGGCTTGCAGCAGAATCCTTCAGATTCAAAGACTTTATTGACCCAAATCTGCATGGCAGATTCTTTGAATATGAGGCTGCTAAACTGGCAAAAATAGCTTTGCTTTGCTCCCATGAGTCTCCTTTTGAGAGGCCATCCATGGAAACCATTGTTCAAGAACTGGGAAATTTTAGTAGCTGTCTCTAA 2025 0.4202 MGFSVLVLLFSIMFFLLNPTWVCGNEELRALMDMKASLDPESHYLLSWTINGHPCSFEGVACNEKGQVANISLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLHGEIPREIANLTELSDLYLNVNHLSGEIPPEIGNMENLQVLQLCYNQLTGSIPTQLSALKKLSVVALQSNQLTGAIPASLGDLSMLVRLDLSSNNLFGSIPTSLADAPSLKVLDVHNNTLSGNVPPALERLDDGFLYESNLGLCGVGFPSLKTCNSSDHVNPSRPEPYGASTKDIPETANVKLPCSGTRCLNSSKSNQATSITIGIFVVIIALSAIGILTFTLYRRRKQKLGNAFHISDSRPSTDEGKGIYRKNGSPLVSLEYSTGWDPLADSRSFNGDSQDMFQSFRFSLEEVESATQYFSQLNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNILTLLRNDNLVRLRGFCCSRGRGECFLIYDFVSNGNLSRFLDVKEGEEVLEWSTRVSIVKGIAKGMAYLHAYKANKPVLVHQNISADKVFIDKRYNPLLADSGLHKLLTNDIVFSALKASAAKGYLAPEYTTTGRFAETSDVYAFGVLLLQILSGKQEITSSTRLAAESFRFKDFIDPNLHGRFFEYEAAKLAKIALLCSHESPFERPSMETIVQELGNFSSCL* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01574 674 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 161 669 IPR046959 -
Rops6g01574 674 FunFam Leucine-rich repeat receptor-like kinase 26 132 - -
Rops6g01574 674 Pfam Protein tyrosine and serine/threonine kinase 407 667 IPR001245 GO:0004672|GO:0006468
Rops6g01574 674 FunFam Protein NSP-INTERACTING KINASE 2 482 671 - -
Rops6g01574 674 Gene3D Phosphorylase Kinase; domain 1 373 481 - -
Rops6g01574 674 SUPERFAMILY L domain-like 23 232 - -
Rops6g01574 674 FunFam Protein NSP-INTERACTING KINASE 2 135 257 - -
Rops6g01574 674 SUPERFAMILY Protein kinase-like (PK-like) 379 667 IPR011009 -
Rops6g01574 674 Gene3D Transferase(Phosphotransferase) domain 1 482 673 - -
Rops6g01574 674 ProSiteProfiles Protein kinase domain profile. 403 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01574 674 CDD STKc_IRAK 409 667 - -
Rops6g01574 674 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Rops6g01574 674 Gene3D Ribonuclease Inhibitor 21 280 IPR032675 -
Rops6g01574 674 Pfam Leucine rich repeat 163 222 IPR001611 GO:0005515
Rops6g01574 674 FunFam Protein NSP-INTERACTING KINASE 2 374 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01574 Rops-Chr6 32732226 32735503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01574 4 515 Miscellaneous Gene Families AT4G22730 55.388 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Rops6g01574 PK_Tyr_Ser-Thr 1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01574 - - gmx:100775422 1160.21