Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01570 ATGGAGGAAAGAGAGAATTTTGGTGGTGCTGGGCACGCAGTGGTGGGTGATGAGGCCCCAGAGAGCTTCCACGTGGCACCGAGAATTGAGAACAACTTGGATTTTTCTCGGGCCACGGTGCCGGCGCCGTCGCCGGCGACGGTGGGGAAGAAGAAGAGAGGGAGGCCTAGGAAGTATGGACCTGACGGCAAGGTGGTGTTAGGAGCGGTGACAGCGCTTTCTCCGATGCCGATTTCGTCGTCGATTCCGTTGACCGGCGAGTTCTCGGCGTGGAAAAGGGGTAGAGGGAGGCCTCTTGAATCTGTCAAGAAGTCATCATATAAGTTTGATTTTGAAAGTCCAGGACTAGGACCAGGACCAGGTGAAGGAATCGCATACTCAGTTGGTGCCAATTTCACCCCACATGTGCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGGTTATGTCCATTTCTCAACAAGGATCACGTGCTATATGCATCCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAACCGACTTCTTCTGGGGGTACTTTAACATATGAAGGAAGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTAATGGGTGGTGGACTTGCTGGTTTGCTGGTAGCTGCTGGTCCTGTGCAGGTTGTTGTGGGCAGTTTCCTTCCTGGTCACCAGCTGGAGCATAAAGCCAAGAAGCAAAGGGTAGAGCATACGTCAACTATTACTACCACTACACCTGTCAATCTTATCCCTAGTGAGGAAATAAAAGTCAGTTTTGGTGGAGTAAAGCCTATTATGACACCAGCTGCTTTTCAAGAAGAGAATATTGCTTCCTTTAACAACAATGTTCAACAAGACTCTAGGAACTCATCTGCTGATGATAAAGATCCCTTACCTGAAAAGGAATCTAACATAAGCCAAACAAATGCTGAAGCAGCAGCATGCTAA 1029 0.4801 MEERENFGGAGHAVVGDEAPESFHVAPRIENNLDFSRATVPAPSPATVGKKKRGRPRKYGPDGKVVLGAVTALSPMPISSSIPLTGEFSAWKRGRGRPLESVKKSSYKFDFESPGLGPGPGEGIAYSVGANFTPHVLTVNAGEDVTMKVMSISQQGSRAICILSATGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKAKKQRVEHTSTITTTTPVNLIPSEEIKVSFGGVKPIMTPAAFQEENIASFNNNVQQDSRNSSADDKDPLPEKESNISQTNAEAAAC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01570 342 ProSiteProfiles PPC domain profile profile. 129 271 IPR005175 -
Rops6g01570 342 FunFam AT-hook motif nuclear-localized protein 1-like 134 266 - -
Rops6g01570 342 MobiDBLite consensus disorder prediction 34 61 - -
Rops6g01570 342 MobiDBLite consensus disorder prediction 305 342 - -
Rops6g01570 342 CDD DUF296 133 247 IPR005175 -
Rops6g01570 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 249 - -
Rops6g01570 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Rops6g01570 342 Gene3D - 134 268 - -
Rops6g01570 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 319 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01570 Rops-Chr6 32675152 32680958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01570 50 308 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 57.586 1.06e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01570 - - gmx:100789179 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00702 5 12392631 12399257 Rops6g01570 6 32675152 32680958 ECH
Rops6g01570 6 32675152 32680958 Rops6g01570 6 32675152 32680958 ECH
Rops5g00702 5 12392631 12399257 Rops6g01570 6 32675152 32680958 PCT