Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01556 ATGGTAGGATTGGAACTCATACCCATAGGTACAATTTTGGCCGTGGTAACTAACCAGGTCGTGAGAACAGCTCATGCAGCAGCTGATGTTCTTATCGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATTGAGCCAGTGCTAAAGGAATTACAGCTTCAAGAATTGAATGAGTCCCAAGCTGCAAGGACTGCTCTGGAGTCTCTTGAAGCAGATGTTAAAAGGGCAAATAATTTGGTTGAGAAGTATAGGAACCGTGGCCGATTTTACTTGCTGGTTAAGTGCAGATCCATAGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGAAAGTCTCTTGCTGCACTGTCTATTGCAAATACTGAAGTGCTATCAAGAATTTCCGATCAGGTTAATAGACTACAGGATGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGCGGCAAATTGTTGACAAGTTGAACCAGGGACTTAGAGAACAGAAACAAGACCAGGCTTTTGCAAATGACATACTAGAGGAGATAGCAAGAGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCCAGCATTAGGAGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAACAAGCTGAATTTATTTTTTTGGAGCAGATCATTAAGTTACTCTCTCAAGCTGACGCAGCAAGGGATTATGAAGAAGTTAAGAATCAATACTTTGAAAGGGTTCAGATGATAGAGAGATATGATTCAAGGGAAAAATATATCCAACCATTTAAGTCTTTCCTCTGTTGCATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACAGGTACTACATGTGAGAGATCTGCCATTGAAGCTTGGTTTTACAATGGCAACAGGACAGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGGTCAAACATTCCACTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTTGTAATAAGTTCTATCAGGGAAAATTTATTGTCAAATTCTGACCTGCAAGAATCCCTGAGCCAAATGCAGGCTCTGATAAGAGAGAATTCTATCAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTGTTATCTCTATCCTTGGGAACTCCGATGACAGAGAAGTGAAGATGAACATTTTGATTACTTTGAAGGATGCTGTAGAGGGGCATGCAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCATGTTATTTCGTGCTTAGGGAGTGACTCTAGCATTTCAAAGGCAGCAATTGATTTGCTATATGACTTGCTTCAAGACCGATCTGGTTGGAATCGATGTTTTTGTAAAAAACTTTCTGAGAATCGCACTGCTGTTCTCTTCCTTGTCGCCCTTCTAAAGGGTCCTGTCAACGATTCAGCTGAGGTTGCAGAGAAGATTTTGATGGAGCTTTTTGAAATAAATGAGGACAGCATTATTACTGCTGCTAATTGTGGCTGGCATAAACCACTTGCTGCTCGCATGATTCGAGGACCGGATTCAAGAATATCAATGGCAAAAGCCATGGTTAATATGGAGCTGGATGACTTAAACTTGAAACTCCTTGGCAAGGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGAATGGTTGTATTGAATCAAAAGACATGTCATTATCAGCCCTGGTTAAACTAGCAGGATCTCATGTCAATAAGGGAATTATTGCTGCATCTGGAGGTGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGATAAGGACACTCATTACCATCAAATGCTCTGAAATCCTTGAGAAGCTTTCTTCGTCCGATGATGGAATTGCTTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATGCCATAATCACAAAGTTGCTAGCTCTGCAGCAGAATTTCAATTCAAGTCACAACTTCCGTAAGCCCACACTACGTGTTCTTCTTGGCATTTGCAAGTTTGAGACTGGTTTGGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGACTCTGACTCAGAAATCCGGGAGACTGCCATAAATCTGCTCTTTCTTTTCTCTCAGCATGAGCCAGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGTTGGAAGCTTTGATTGGATTTCTTGAGAATGATGACAATGATAATGTACAAATGGCTGCTGCTGGTTTACTAGCTAACCTGCCAAAATCAGAACGAGAACTCACCATGAAGTTGATTGAAATGGGTGGACTTGATGCAATCATAAGCATTTTGAAAACAGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAGATATTGAGTCACAACGTTATTTAGTTAAACGTGGAATCTATCCTTTGCTTGTAAATTTTCTCAATACTGGTTCAGTCACAGCAAAGGCTAGAGCAGCAGCTTTCATAGGTGACCTTTCTATGAGCACTCCAAAGCTCACAGTTGTTTCCAAATCACCTAGTTGCTGGTTTTTAAAATCATCACGGGTTCCTTTATGTCCAGCACATGAGAGTATATGTAGTGTGACCACCACATTTTGCCTTTTGGAAGCAAATGCTTTGCCTGGATTGATAAAGCTGTTGCATGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAGACACTTTCCACTTTGGTTTTGGAAGACTTTCCTCAAAGGGGGGCTCGTGTCTTGCATGAGTCAAATGCAATAAGACCACTATTGGACATTTTGAACTGGGGAACTGATTCTCTAAAGGCAGAAGCTCTAGGACTGTTGGAGAAAGTGTTTGTGTCAAAGGAAATGGTAGAATACCATGGAACAACAGCTAGATCACGTTTAATCGGTCTAACTGGCATGAATATACATGGGGATGGCCACCTCAGGAGAAAGGCTGCAAAGGTACTATCATTGCTTGAACGTTATTCAAAGTCATCATCATCTGCAGCAATCTCAGGAGTTCTGGAGTGA 3045 0.4141 MVGLELIPIGTILAVVTNQVVRTAHAAADVLIGKESFKALSKHLFDIEPVLKELQLQELNESQAARTALESLEADVKRANNLVEKYRNRGRFYLLVKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQDEMQRVEFEASQSQRQIVDKLNQGLREQKQDQAFANDILEEIARAVGVPVEPSEISKELASIRREKEEAANRKEQAEFIFLEQIIKLLSQADAARDYEEVKNQYFERVQMIERYDSREKYIQPFKSFLCCITGAVMVDPVSLCTGTTCERSAIEAWFYNGNRTDPETKEVLEDTTLRSNIPLRQSIEEWRELNYCLVISSIRENLLSNSDLQESLSQMQALIRENSINKDWISIGELTDIVISILGNSDDREVKMNILITLKDAVEGHARNKEKVAESQGWDHVISCLGSDSSISKAAIDLLYDLLQDRSGWNRCFCKKLSENRTAVLFLVALLKGPVNDSAEVAEKILMELFEINEDSIITAANCGWHKPLAARMIRGPDSRISMAKAMVNMELDDLNLKLLGKEGVIPPLLEMLNGCIESKDMSLSALVKLAGSHVNKGIIAASGGVPLILDLMFSPRIRTLITIKCSEILEKLSSSDDGIAFFVDGEGKQLELDAIITKLLALQQNFNSSHNFRKPTLRVLLGICKFETGLVKKAILAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTMKLIEMGGLDAIISILKTGKMEAKENALSALFRFTDPTDIESQRYLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSPSCWFLKSSRVPLCPAHESICSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAIRPLLDILNWGTDSLKAEALGLLEKVFVSKEMVEYHGTTARSRLIGLTGMNIHGDGHLRRKAAKVLSLLERYSKSSSSAAISGVLE* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01556 1014 Gene3D - 8 124 IPR036537 GO:0007166
Rops6g01556 1014 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Rops6g01556 1014 SMART arm_5 406 445 IPR000225 GO:0005515
Rops6g01556 1014 SMART arm_5 534 573 IPR000225 GO:0005515
Rops6g01556 1014 SMART arm_5 916 956 IPR000225 GO:0005515
Rops6g01556 1014 SMART arm_5 756 796 IPR000225 GO:0005515
Rops6g01556 1014 SMART arm_5 712 754 IPR000225 GO:0005515
Rops6g01556 1014 SMART arm_5 799 839 IPR000225 GO:0005515
Rops6g01556 1014 SMART arm_5 574 616 IPR000225 GO:0005515
Rops6g01556 1014 SMART arm_5 872 912 IPR000225 GO:0005515
Rops6g01556 1014 SMART arm_5 670 710 IPR000225 GO:0005515
Rops6g01556 1014 SUPERFAMILY ARM repeat 648 1001 IPR016024 -
Rops6g01556 1014 SUPERFAMILY ARM repeat 356 719 IPR016024 -
Rops6g01556 1014 Gene3D - 516 846 IPR011989 -
Rops6g01556 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 333 IPR013083 -
Rops6g01556 1014 Gene3D - 339 504 IPR011989 -
Rops6g01556 1014 SUPERFAMILY RING/U-box 246 330 - -
Rops6g01556 1014 Coils Coil 127 154 - -
Rops6g01556 1014 CDD MLKL_NTD 34 145 - -
Rops6g01556 1014 Coils Coil 62 89 - -
Rops6g01556 1014 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Rops6g01556 1014 CDD RING-Ubox_PUB 265 314 IPR045210 -
Rops6g01556 1014 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Rops6g01556 1014 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Rops6g01556 1014 Coils Coil 197 217 - -
Rops6g01556 1014 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
Rops6g01556 1014 Gene3D - 850 1009 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01556 Rops-Chr6 32452142 32457633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01556 262 968 U-box Gene Family AT1G76390 26.873 9.19e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01556 - - gmx:100783638 1640.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01556 6 32452142 32457633 Rops6g01556 6 32452142 32457633 ECH