Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01555 ATGGAATCGCCATTGCAACAACCATCGGCACGCACAGGTTCAGCAACTATCCTCGGAAAATACGAACTAACACGGCTTTTAGGCCGTGGAAGTTTCGCTAAGGTGTACAAAGCACGTTCCCTTATCGACGGCTCCACCGTCGCCGTTAAGGTTATCGACAAGTCGAAAACCATCGACGCCGCCATGGAGCCTCACATCGTTCGTGAGATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTCCGAATCCACGAGGTAATGGCCACAAAGACCAAGATCCACCTCGTCGTTGAGTTCGCCGCCGGCGGGGAACTTTTCTCCGCGATAGCACGCCGTGGACGCTTGCCGGAATCCACCGCCCGCCGATACTTCCAGCAACTCGTCTCCGCTCTCCGCTTCTGCCATCGCAACGGCGTCGCCCACCGTGACCTCAAGCCGCAGAATCTTCTCCTCGACGCCAACGGTAATCTCAAGGTCTCCGATTTCGGACTCTCCGCCTTACCGGAGCAGCTAAACAACGGCCTCCTCCACACCGCATGCGGCACGCCGGCGTACGCCGCCCCGGAGATTCTCTACCGGAGCGGCGGATACGACGGGTCCAAAGCAGACGCGTGGTCATGCGGCCTCGTTCTCTACGTTCTCCTCGCCGGTCACCTTCCGTTCGACGATTCGAACATTCCGGTGATGTGCAAGAAGATTTCCCGGCGAGACTACAAGTTCCCGGAGTGGATTACGAAGCGTGCCCGTTTCGTCATCTATAGGTTACTCGACCCGAACCCGGAAACCAGAATGAGCCTGGAGGCCCTTTTTGAGAACGCGTGGTTCAAAAAATCGTTAAGAACGGAAGCAGAAGAGAGCGTGTTAGGATTAGATTCGGGTTATGGAAACGAAGGGAAGGGTTCGGGTGTGAACGCGTTTCATTTAATATCCATGTCTTCGGGTTTGGATTTGAGGGGTTTGTTCGAAACGACGTCGGATGGTGAAAATAGGAGGAGTGAGAAGAGGTTCATGTCAAGTGCTAAGGTGGAGGTTGTGGAAGAGAGGGTGAAGGAGGTTGGAGGGGTTTTGGGGTTTAGGGTTGAGGTAGGGAAGAATAGTGTAATTGGGTTGGTGAAAGGGAAGGTGGGTTTGGTGGTTGAGGTGTTTGAGATTGTGCCAGCTCAACTTCTCTTGGTGGCAGTGAAAGTTGAGGAGGGTGGGTTGGAGTTTGAGACCCATCATTGGGAGGATTGGAAAGTTGGCTTGCAAGATCTTGTCCTTTCTTGGCACAATGAACAATCAAACCATGAATGA 1299 0.5404 MESPLQQPSARTGSATILGKYELTRLLGRGSFAKVYKARSLIDGSTVAVKVIDKSKTIDAAMEPHIVREIDAMRRLHHHPNILRIHEVMATKTKIHLVVEFAAGGELFSAIARRGRLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDANGNLKVSDFGLSALPEQLNNGLLHTACGTPAYAAPEILYRSGGYDGSKADAWSCGLVLYVLLAGHLPFDDSNIPVMCKKISRRDYKFPEWITKRARFVIYRLLDPNPETRMSLEALFENAWFKKSLRTEAEESVLGLDSGYGNEGKGSGVNAFHLISMSSGLDLRGLFETTSDGENRRSEKRFMSSAKVEVVEERVKEVGGVLGFRVEVGKNSVIGLVKGKVGLVVEVFEIVPAQLLLVAVKVEEGGLEFETHHWEDWKVGLQDLVLSWHNEQSNHE* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01555 432 Gene3D Kinase associated domain 1, KA1 302 422 - -
Rops6g01555 432 Gene3D Transferase(Phosphotransferase) domain 1 12 299 - -
Rops6g01555 432 Pfam NAF domain 305 363 IPR004041 GO:0007165
Rops6g01555 432 SUPERFAMILY Protein kinase-like (PK-like) 17 282 IPR011009 -
Rops6g01555 432 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Rops6g01555 432 SMART serkin_6 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01555 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Rops6g01555 432 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Rops6g01555 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 397 - -
Rops6g01555 432 CDD CIPK_C 306 418 - -
Rops6g01555 432 Pfam Protein kinase domain 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01555 432 FunFam Non-specific serine/threonine protein kinase 14 106 - -
Rops6g01555 432 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01555 432 FunFam Non-specific serine/threonine protein kinase 11 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01555 Rops-Chr6 32422658 32423956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01555 1 426 CBL-interacting serine-threonine protein kinases AT4G14580 59.028 8.64e-170 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops6g01555 Pkinase 7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01555 K12761 - gmx:100784173 656.366