Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01550 ATGGAAGGTACTGTGGCATATGAGAATGATCTCAACCTTAAGGCTACAGAGCTTAGATTGGGACTTCCAGGAACTGAGGAAAAAGCAGTTCCTGAAGTTAGAACCAACAAAAGGCCATTGACTGAAACTTCTGAGAAGTGTGGTCCAAAGGGTCAACATGTGGAAAGTGATGCAGCGCCTCCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAAAACAGCCTGCAGGAAGCTGAGGCTGCTGGGATTTATGTGAAAGTGAGCTTGGATGGAGCCCCTTACCTCAGAAAGATAGACTTGAAGGTCTATGGAGGCTACAAACAGCTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTATAAGGGATCTGATTATGCACCTACTTATGAAGACAAGGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAAATGTTTGTGACTTCATGCAAAAGGCTAAGAATCATGAAAGGATCAGAAGCGAGAGGTTTGGGTTGTGGTGTATGA 555 0.4468 MEGTVAYENDLNLKATELRLGLPGTEEKAVPEVRTNKRPLTETSEKCGPKGQHVESDAAPPSKAKIVGWPPIRSYRKNSLQEAEAAGIYVKVSLDGAPYLRKIDLKVYGGYKQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWEMFVTSCKRLRIMKGSEARGLGCGV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01550 184 FunFam Auxin-responsive protein 82 184 - -
Rops6g01550 184 Pfam AUX/IAA family 50 181 IPR033389 -
Rops6g01550 184 Gene3D - 81 184 - -
Rops6g01550 184 MobiDBLite consensus disorder prediction 30 52 - -
Rops6g01550 184 SUPERFAMILY CAD & PB1 domains 78 173 - -
Rops6g01550 184 MobiDBLite consensus disorder prediction 24 61 - -
Rops6g01550 184 ProSiteProfiles PB1 domain profile. 87 174 IPR000270 GO:0005515
Rops6g01550 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 178 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01550 Rops-Chr6 32334380 32335854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01550 90 180 B3 DNA Binding Superfamily AT2G46530 36.264 1.20e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops6g01550 AUX_IAA 1.4e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01550 K14484 - gmx:100527777 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01550 6 32334380 32335854 Rops6g01550 6 32334380 32335854 ECH