Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01549 ATGGCAACTTTGCTGGGAAAGGAGCATGGTTTGAACCTGAAGGAGACTGAGCTGTGCCTTGGTTTGCCTGGTGGTGGGGGTGGTGGCGGTGGCTCTGAGGTGGAAACTCCAAGGGCCAACGGGAAAAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTTCATCTTCAATCCAAGGAAGATCTGAATGATAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGACCCTGCCAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAGAAGATTAACAGTGAGGATGGCACTGAGAAGACCACAACCAGCACTGCTGCTGGGACATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACTTGACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAAAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTAGTGGGAGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGCCTGCGAATAATGAAAGGATCAGAAGCGATTGGGCTTGCACCAAAAGCCATGGAAAAATGCAAAAGCAGAGCCTGA 720 0.4806 MATLLGKEHGLNLKETELCLGLPGGGGGGGGSEVETPRANGKRGFSETVDLKLHLQSKEDLNDNLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKINSEDGTEKTTTSTAAGTFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPKAMEKCKSRA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01549 239 ProSiteProfiles PB1 domain profile. 121 221 IPR000270 GO:0005515
Rops6g01549 239 FunFam Auxin-responsive protein 116 231 - -
Rops6g01549 239 SUPERFAMILY CAD & PB1 domains 120 220 - -
Rops6g01549 239 Coils Coil 51 71 - -
Rops6g01549 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 226 IPR003311 GO:0005634|GO:0006355
Rops6g01549 239 MobiDBLite consensus disorder prediction 23 43 - -
Rops6g01549 239 Pfam AUX/IAA family 39 230 IPR033389 -
Rops6g01549 239 Gene3D - 116 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01549 Rops-Chr6 32289421 32291942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01549 102 232 B3 DNA Binding Superfamily AT2G46530 29.771 2.38e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Rops6g01549 AUX_IAA 1.6e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01549 K14484 - gmx:100810762 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01549 6 32289421 32291942 Rops6g01549 6 32289421 32291942 ECH