Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01546 ATGTCTAACAAGTGTGCCTCATACCCGCTGCCTCAACCTGGCCCTCTTTTGGATGTTATATTTTGGTCTTTGACAGGGAATTTTCACAAGCATAGTAGGCTAGAGGTGGTGGTTAGGCATTGCATCAATGTAAGGACAGATCACAATCTGCAATATTTGAGGGAGAAAGTTTTCCCTTGTGAAGTAAAAAAGGTTAAGGCACCTGAAAATGTTGCTTTAGTTACATTGCTAACCAAAAGAAAGAATTCTCTATCTTCATTAAAAACTAATGCAAGAAGAGTGAAAGCTGCTGCAAGAAAAGTTTTCACTCCACAACAAGAATCAGATTTATCTGCTTCTAAACCTGATAAAGTGGCAGATGTTAAGAAAGAAGGGATAGAAATATTGGATGAAGTTTCTACAATTCTATCTGCAAGAAGAGCAAAAGCTGCAGCAAGAAAAAAATTTATTCGGTGTGAATTAACTCCTACTTGTCAACTTGACAAAGTAACAGGAGTTGAAAACAAAGATGGTGACCACCCCAAGCTTGAAACTTTCAGTGAGACTTCCAAGACCAGAGTTCAGAATTCTTCAGAATCAGATTCAAATCAACAAATAGTGCCCAACAAGATTTCAGGGGACAGTGTTGAGTTATGGAAAGAAAAGGCTAATATGTATGAGCCATTGAATTGCATTGTGGAAGCTGCAAGCAAAAACAAGTCTCTTAAAAAGTCCACCATGCAAGAAAATGGTGTCATGCCAGTGCTTGTGGACTCTAGTGACAATGAATCCGAGGTGTCTAAGGTCAAAGTTAAGAAACATTGTCACCGAATAGAAGCAACTGGTAATCAAAATGAATCGACTCCTCCAAAATCAGATTCCTTGGAACTTAAAAGCACCCAAGAAAAAAGAGCCAAATTCTCTGAGGACTTGAATGTTCCAGCACAACCTGTGATTGATTTAAACAGTGAAAGCAACAAAGGACTTGGTCCAATCTGGTTCTCCTTGGTTGCTTCTGAAGAGAAGGAAGTAGGTGCACGATTGCCACAGATATCTTCCAGCTACCTAAGGGTCAAGGATGGTAGTTTACCTGTTTCCTATATCAAAAAATATCTCGTGAAGAAGCTTGATCTTGCTAGCGAAGCTGAGGTGGAGATCTCATTAGGAGGTAGGCCAGTTTTATCTTCATTGCAACTGCAAAACTTAGTAGACTTGTGGTTGCAAACAGTGCCAACAAATGAGAGGATTCAGACAGCTGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATACAGTCGAAAGGCTTGA 1293 0.3975 MSNKCASYPLPQPGPLLDVIFWSLTGNFHKHSRLEVVVRHCINVRTDHNLQYLREKVFPCEVKKVKAPENVALVTLLTKRKNSLSSLKTNARRVKAAARKVFTPQQESDLSASKPDKVADVKKEGIEILDEVSTILSARRAKAAARKKFIRCELTPTCQLDKVTGVENKDGDHPKLETFSETSKTRVQNSSESDSNQQIVPNKISGDSVELWKEKANMYEPLNCIVEAASKNKSLKKSTMQENGVMPVLVDSSDNESEVSKVKVKKHCHRIEATGNQNESTPPKSDSLELKSTQEKRAKFSEDLNVPAQPVIDLNSESNKGLGPIWFSLVASEEKEVGARLPQISSSYLRVKDGSLPVSYIKKYLVKKLDLASEAEVEISLGGRPVLSSLQLQNLVDLWLQTVPTNERIQTAVGSSAKDFVMVLSYSRKA* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01546 430 MobiDBLite consensus disorder prediction 272 296 - -
Rops6g01546 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 45 429 IPR044807 GO:0004842
Rops6g01546 430 MobiDBLite consensus disorder prediction 274 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01546 Rops-Chr6 32229838 32232598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01546 330 429 C3H Transcription Factor Family AT3G23060 52.000 9.22e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01546 K16277 - gmx:102669950 289.656