Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01542 ATGGGATTGAAGAAGGGTCCTTGGTCTCCTGAGGAAGATCAAATCCTCACATCTTACATCCAAAAACATGGCCATGGCAACTGGCGTGCCCTCCCAAAGCAATCAGGCCTGTTAAGGTGTGGGAAGAGCTGCAGATTGCGCTGGATTAACTATTTGAGACCTGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAACTATCATTAAGCTGCATGAAATGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCGGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACTCATTTGAAGAAGAAGTTGCTGAAAACAAACCAACCCAATTCAGAAGCCAAAAGGGTCTGTACTAAACCAAAAATTAAACGTTCTGATTCCAATTCCAGCACCATAACTCAATCAGAACCTGCCAGTCTTAATTTCCGTGAAATGGAGACTACATCAGCATGCACTACCACTTCTAGTGATTTTTCATCAGTCACTGTTGGTGAAAGCAAAAATATCAAGAGTGAAGACATAGAGTCTATGGAAACAATGCCTGAAATTGACGAGAGTTTTTGGTCAGAAGCGGCAATGGATGAAACCCCCACCATGTCATCAAAATCTTTGACAATCTCAAATGAGTACACATTTAACTATGAGGAAACTTTCCAACAGAGTTGTGATAATTCAAACTTTGATGATGGCATGGATTTCTGGTATGACATATACATCAAAACTGAGGGTCCAATAGAATTGCCAGAGTTCTGA 765 0.4065 MGLKKGPWSPEEDQILTSYIQKHGHGNWRALPKQSGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLKTNQPNSEAKRVCTKPKIKRSDSNSSTITQSEPASLNFREMETTSACTTTSSDFSSVTVGESKNIKSEDIESMETMPEIDESFWSEAAMDETPTMSSKSLTISNEYTFNYEETFQQSCDNSNFDDGMDFWYDIYIKTEGPIELPEF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01542 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 204 - -
Rops6g01542 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Rops6g01542 254 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Rops6g01542 254 CDD SANT 60 103 IPR001005 -
Rops6g01542 254 Gene3D - 4 57 - -
Rops6g01542 254 SMART sant 4 54 IPR001005 -
Rops6g01542 254 SMART sant 57 105 IPR001005 -
Rops6g01542 254 CDD SANT 7 52 IPR001005 -
Rops6g01542 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Rops6g01542 254 Gene3D - 60 142 - -
Rops6g01542 254 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Rops6g01542 254 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Rops6g01542 254 SUPERFAMILY Homeodomain-like 1 99 IPR009057 -
Rops6g01542 254 FunFam MYB-related transcription factor 4 57 - -
Rops6g01542 254 FunFam Transcription factor MYB15 59 133 - -
Rops6g01542 254 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01542 Rops-Chr6 32181841 32184100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01542 1 254 MYB Transcription Factor Family AT2G31180 47.710 5.86e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g01542 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01542 K09422 - gmx:100807569 397.897