Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01538 ATGGGGCAAAGGCAATCCAAAAGCGAGTTGCTCTACCAGCAAGTGAGTTATGGGAACACCGAAGGAATCAAAGCCCTTCACAGAGAAGGTGCAGGCCTAGAGTGGATGGACAGAGAAGGAAAGACCCCCTTGATCGTTGCTTGTATGAATCCTGAGCTTGATAATGTTGCTAAAACTTTGATACAACTCGGAGCCAATGTCAATGCATACCGTCCTGGACGCCATGCTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATGGTTAAGTTACTTCTTACACATGGAGCCGATGCTTTGGTCTTGAATGATGATTGTCAAACCGCTCTTGAGGTTGCCAGGGCTAAAGGACACAGCAATGTTGTTCGTGCAATTGAGAGTCATCTATGCTTGTTCTCCAGTTGGTTGCGGGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCGAGAAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGAAATCTCACCAGACCTTACAAGTTGGAGCTTGCCATATATTCTAATTTGCAGGATGCACGACCACGTACAATTATTGCTCTGTGGAAGGCCAATTTAGAAGAACCAAGGCTTCGCCAGTCTGATCCGTCAGTGACAATCGTTGATTACACTACCAAAACACGCATTAAACTCGGGCCTGCTAGTGAGAATGACAAGCAACAGCTTACGTGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGCAAATCCAGCATTTTTGCAACATAATGTGGCTACAGTTCCACCAACAGCACCACCAGCTGCAGAAGACCATGAGTTGGCTATGGCTATCAATGCATCCATTCAATCTGCTATTCAGGAGAGGCCAACCTTTCCTGACGCCCAACCGAACTTTGAAGCAAGCTCTTCAAGCATTGGAGCCAATACAAGCAAGCATGGTTTTCTGGGTACACCAAATCCAAATACAAATGATAGTGAGTCTGTACATGAAGCTGACCCAGGTGGCAATACTCAACATGTCCAGAGCCATGATGACAATGTCTCTGGTAGTGGTCTGGATTTCAATCCATCAGCTCCTCCTGTTGATGATGAGATTCCAGCAGATGGCCCCATTCATTATCCATCAATCGATTTAAGCCCTGTTGATATATCAACTCCTGTTGTTGAGAATCTACCTAAAGAAGAAGGAAAAAATGCTGGTGGAAGTAGTTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCCTGCTTGAATGAGGTGAAAACGAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAGATCAAGTCATAAAGCTATATCATGTTTGA 1383 0.4541 MGQRQSKSELLYQQVSYGNTEGIKALHREGAGLEWMDREGKTPLIVACMNPELDNVAKTLIQLGANVNAYRPGRHAGTPLHHAAKRGLESMVKLLLTHGADALVLNDDCQTALEVARAKGHSNVVRAIESHLCLFSSWLREFHGPGFLEVVAPQLVSRKVWVVVLPVGSRNLTRPYKLELAIYSNLQDARPRTIIALWKANLEEPRLRQSDPSVTIVDYTTKTRIKLGPASENDKQQLTWFSNACKGIPQANPAFLQHNVATVPPTAPPAAEDHELAMAINASIQSAIQERPTFPDAQPNFEASSSSIGANTSKHGFLGTPNPNTNDSESVHEADPGGNTQHVQSHDDNVSGSGLDFNPSAPPVDDEIPADGPIHYPSIDLSPVDISTPVVENLPKEEGKNAGGSSSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYHV* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01538 460 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Rops6g01538 460 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Rops6g01538 460 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Rops6g01538 460 SUPERFAMILY RING/U-box 408 454 - -
Rops6g01538 460 CDD RING-HC_XBAT35-like 405 458 - -
Rops6g01538 460 SMART ring_2 409 447 IPR001841 -
Rops6g01538 460 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Rops6g01538 460 MobiDBLite consensus disorder prediction 294 375 - -
Rops6g01538 460 ProSiteProfiles Zinc finger RING-type profile. 409 448 IPR001841 -
Rops6g01538 460 Gene3D - 79 132 IPR036770 -
Rops6g01538 460 Gene3D - 2 78 IPR036770 -
Rops6g01538 460 MobiDBLite consensus disorder prediction 294 356 - -
Rops6g01538 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 459 IPR013083 -
Rops6g01538 460 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Rops6g01538 460 SMART ANK_2a 108 137 IPR002110 GO:0005515
Rops6g01538 460 SMART ANK_2a 39 69 IPR002110 GO:0005515
Rops6g01538 460 SMART ANK_2a 75 104 IPR002110 GO:0005515
Rops6g01538 460 PANTHER ROLLING PEBBLES, ISOFORM B 400 458 - -
Rops6g01538 460 Pfam Zinc finger, C3HC4 type (RING finger) 407 454 - -
Rops6g01538 460 SUPERFAMILY Ankyrin repeat 9 134 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01538 Rops-Chr6 32136430 32141417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01538 399 457 C3H Transcription Factor Family AT3G06140 32.203 3.01e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01538 - - gmx:100805974 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01538 6 32136430 32141417 Rops6g01538 6 32136430 32141417 ECH