Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01533 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGAAGGAAGATTGGGAGTGGATCGTTTGGAGAGCTTTACTTGGGTGTTAATATACAAAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGGGGAACTGGTATACCCCATTTAAAATGGTTTGGGGTTGAGGGTGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTACTGCAGTAGGAAATTCTCTCTGAAAACAGTCCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTCTTAATGGGTTTAGGCCGTAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAATATCGGGATCTTCAAACGCACAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCTCGGTATGCAAGTGTTAATACTCATCTGGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCGCTTGGTTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAACAAAAATACGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCATATCCATCGGAATTCACATCGTACTTCCACTACTGCCGATCATTGCGGTTTGAAGATAAGCCTGATTATTCATATCTTAAGAGACTCTTTCGGGACCTATTCATCCGAGAAGGCTATCAGTTTGACTACGTATTTGATTGGACTGTATTAAAGTATCCACAAATTGGATCTAGTTCTAGAGCTCGACCAAGCGGGAAACCAGTCATAAACCCAGGACCATCAGTAGGAGAGAGAGCAGAACGGCCTTCAGGTGGACCAGAGGTTCGGGATAGATTCTCAGGTGCAGTCGAGGCATTTGCAAGAAGGAATGGCTCAGGGCTTGGTCTGCATGATCGTTCTAAGCATATGTCTTCAGTTGATGTGCCATCTTCCAAAGACGTGCAAGCTGATTCTGAGAGGCCTCGGAGCTCTTCTCGCAATGGCAGTTCTTCAAAAAGGCTTGTTTTTTCAAGCAGCCGACCAAGCTCTTCTGGTGAGCCTAGTGAAAACCGTTCCAGTAGACTGGTCTCAAGCAGTGGCCGACTATCTACAACTCACAGGACTCAACCAGGTTTTGAGTCCAAAACATCTTTTACTCGTGCTTCTGGGACAAGAGGTGGTCGTGATGATACACTGAGGAGCTTTGAACTCCTTTCAATCGGTACAGGAAAAAGGAAATGA 1389 0.4356 MDHVIGGKFKLGRKIGSGSFGELYLGVNIQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGSSSRARPSGKPVINPGPSVGERAERPSGGPEVRDRFSGAVEAFARRNGSGLGLHDRSKHMSSVDVPSSKDVQADSERPRSSSRNGSSSKRLVFSSSRPSSSGEPSENRSSRLVSSSGRLSTTHRTQPGFESKTSFTRASGTRGGRDDTLRSFELLSIGTGKRK* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01533 462 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01533 462 CDD STKc_CK1_delta_epsilon 8 282 - -
Rops6g01533 462 MobiDBLite consensus disorder prediction 300 333 - -
Rops6g01533 462 MobiDBLite consensus disorder prediction 377 440 - -
Rops6g01533 462 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Rops6g01533 462 FunFam Casein kinase 1-like protein 1 330 - -
Rops6g01533 462 PANTHER CASEIN KINASE-RELATED 9 408 - -
Rops6g01533 462 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01533 462 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Rops6g01533 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops6g01533 462 FunFam Putative Casein kinase I 1 85 - -
Rops6g01533 462 MobiDBLite consensus disorder prediction 346 448 - -
Rops6g01533 462 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops6g01533 462 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01533 Rops-Chr6 32075252 32082348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01533 8 213 MAP Kinase Kinase Kinase AT3G06030 25.926 1.25e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Rops6g01533 Pkinase 1.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01533 K08960 - cave:132177205 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01533 6 32075252 32082348 Rops6g01533 6 32075252 32082348 ECH